Browse Element(s) Details


OsAffx.9087.1.S1_at

Description gb:NM_192986.1
DB_XREF= gi:34913055
GEN=P0013G02.20
TID=OsAffx.9087.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013G02.20 (P0013G02.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g304542/11Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30390OsAffx.27083.1.S1_at11/115+17533724..17540517Glycosyl hydrolase family 1 protein
LOC_Os05g30400Os.10482.1.S1_at11/115+17540516..17542514expressed protein
LOC_Os05g30410Os.5533.1.S1_at9/115+17545795..17548104PHD finger-like domain protein 5A, putative, expressed
LOC_Os05g30420Os.55569.1.S1_at10/115+17550003..17552334expressed protein
LOC_Os05g30430Os.9888.1.S1_at11/115+17556799..17560313expressed protein
LOC_Os05g30440OsAffx.27084.1.S1_at11/115+17560522..17561175hypothetical protein
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30470OsAffx.27085.1.S1_at9/115+17574963..17575793hypothetical protein
LOC_Os05g30480Os.54759.1.S1_at1/115+17578611..17580620Luminal binding protein 4 precursor, putative, expressed
LOC_Os05g30490NANA5+17583469..17584251Harpin-induced protein 1 containing protein
LOC_Os05g30500OsAffx.14888.1.S1_at11/115+17589788..17590596expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006772biological_processthiamin metabolism
GO:0004788molecular_functionthiamin diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9087.1.S1_at--253--10071Chr01:22744659..22744683 (25 bp)
TAGGGCCGTCCACGCTATCATCGTC
NONE
OsAffx.9087.1.S1_at--804--1351Chr01:22744517..22744541 (25 bp)
AGAGAGGAAGCGAAACTTCTCCTTG
NONE
OsAffx.9087.1.S1_at--51--8951Chr01:22744470..22744494 (25 bp)
TGACGAGCTCACTGTTGCGGTGCCA
NONE
OsAffx.9087.1.S1_at--274--791Chr01:22744245..22744435 (25 bp)
ATGGGACGCGTCACCGAACACGCAG
NONE
OsAffx.9087.1.S1_at--769--1791Chr01:22744233..22744257 (25 bp)
ACCGAACACGCAGCCAAACATGTGG
NONE
OsAffx.9087.1.S1_at--382--2592Chr05:17566079..17566103 (25 bp)
AACGAAGGGCAAATGAGTCCGACGA
LOC_Os05g30454
OsAffx.9087.1.S1_at--319--8833Chr07:13114443..13114467 (25 bp)
TGAGTCCGACGAAAATTTTCTCCAC
NONE
OsAffx.9087.1.S1_at--37--5811Chr01:22744165..22744189 (25 bp)
GACCTAACGCCGTCACTTCAAAATA
NONE
OsAffx.9087.1.S1_at--967--1851Chr01:22743815..22744165 (25 bp)
ACGACGGAACCGGTGAGCAGCGACA
NONE
OsAffx.9087.1.S1_at--217--9311Chr01:22743783..22743807 (25 bp)
TCCCGCGGGACTTCAGCACGGAGAT
NONE
OsAffx.9087.1.S1_at--879--5831Chr01:22743745..22743769 (25 bp)
GACCTCGGCATGAAGAGGGACCCAG
NONE
Target Sequence 
TAGGGCCGTCCACGCTATCATCGTCGTCCTCGTCGTCAAGCGGCCTCTTCGCCGCCGTCGACGAAGAACGCGATTTGGTG
GCGGCGACGCCCTTCGTTGTGGGCTTCGGTTCGGGGAGCTCCCTGGCCCGGGACGACGGCGCAGAGAGGAAGCGAAACTT
CTCCTTGCCGTCGCTGTGGCTGCGGCCGATGACGAGCTCACTGTTGCGGTGCCACCGCGTGATGGATCCCGTCGACCCGC
TCTTCCGCATGGGACGCGTCACCGAACACGCAGCCAAACATGTGGGGAACGAAGGGCAAATGAGTCCGACGAAAATTTTC
TCCACTCCGACCTAACGCCGTCACTTCAAAATACGACGGAACCGGTGAGCAGCGACAGCCAGCCTCCCGCGGGACTTCAG
CACGGAGATGGATGGGTGCGGCGACCTCGGCATGAAGAGGGACCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis