Browse Element(s) Details


OsAffx.9167.1.S1_x_at

Description gb:NM_192606.1
DB_XREF= gi:34912295
GEN=P0451D05.11
TID=OsAffx.9167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0451D05.11 (P0451D05.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g137001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g155401/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13660Os.44283.1.S1_at11/117+7837068..7839562UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13660Os.44283.1.S1_x_at11/117+7837068..7839562UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13669NANA7+7845156..7845498NA
LOC_Os07g13680NANA7+7846883..7851771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13690NANA7+7853335..7856259retrotransposon protein, putative, unclassified
LOC_Os07g13700OsAffx.9167.1.S1_x_at1/117+7862777..7865689retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13710NANA7+7866684..7870950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13719NANA7+7871896..7874660hypothetical protein
LOC_Os07g13728NANA7+7875250..7877925hypothetical protein
LOC_Os07g13740NANA7+7882736..7883746hypothetical protein
LOC_Os07g13750OsAffx.16111.1.S1_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13750OsAffx.11259.1.S1_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13750OsAffx.22699.1.S1_x_at1/117+7884765..7891981retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9167.1.S1_x_at--171--3491Chr01:23614672..23614696 (25 bp)
CAGGACCAGCTCAGAGTAGTATCTG
NONE
OsAffx.9167.1.S1_x_at--697--5851Chr01:23614675..23614699 (25 bp)
GACCAGCTCAGAGTAGTATCTGCAT
NONE
OsAffx.9167.1.S1_x_at--146--6911Chr01:23614690..23614714 (25 bp)
GTATCTGCATTGATATCTATCGTTG
NONE
OsAffx.9167.1.S1_x_at--135--9491Chr01:23614693..23614717 (25 bp)
TCTGCATTGATATCTATCGTTGATG
NONE
OsAffx.9167.1.S1_x_at--1150--6231NONE
GATGGAGTGTATAATAGCAAGGCAA
NONE
OsAffx.9167.1.S1_x_at--420--8012Chr01:23616526..23616550 (25 bp)
GGAGGTGTGGGAACCGCCGAAGGAT
NONE
OsAffx.9167.1.S1_x_at--122--5451Chr01:23616536..23616560 (25 bp)
GAACCGCCGAAGGATGTGGGCGCAT
NONE
OsAffx.9167.1.S1_x_at--602--791Chr01:23616549..23616573 (25 bp)
ATGTGGGCGCATGCCGCGAGGGAGA
NONE
OsAffx.9167.1.S1_x_at--378--6133Chr01:23616566..23616590 (25 bp)
GAGGGAGAGGATCGCCGGCCGCGGC
NONE
OsAffx.9167.1.S1_x_at--1052--6133Chr07:7863971..7864206 (25 bp)
GAGGGTTCACCTGCCACAGCGTCGA
LOC_Os07g13700
OsAffx.9167.1.S1_x_at--912--2152Chr09:9497958..9497977 (20 bp)
ACAGCGTCGATCTGCTCGGCCGGCA
LOC_Os09g15540
Target Sequence 
CAGGACCAGCTCAGAGTAGTATCTGCATTGATATCTATCGTTGATGGAGTGTATAATAGCAAGGCAAGGAGAGGCGCCGG
AGGCGCGGGAGGTGTGGGAACCGCCGAAGGATGTGGGCGCATGCCGCGAGGGAGAGGATCGCCGGCCGCGGCGCCCGCAC
GGGGAGGGTTCACCTGCCACAGCGTCGATCTGCTCGGCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9167.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis