Browse Element(s) Details


OsAffx.9584.1.S1_at

Description tigr:9629.m05956
TID=OsAffx.9584.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6060011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60540OsAffx.21780.1.S1_at11/111+35335715..35337947WRKY DNA binding domain containing protein
LOC_Os01g60549NANA1+35339515..35340129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60560OsAffx.21779.1.S1_at11/111+35343151..35344696retrotransposon protein, putative, unclassified
LOC_Os01g60569NANA1+35347231..35347755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60580OsAffx.21778.2.S1_x_at4/111+35351155..35352003transposon protein, putative, Pong sub-class
LOC_Os01g60590OsAffx.8070.1.S1_x_at11/111+35352452..35354519transposon protein, putative, Pong sub-class
LOC_Os01g60600OsAffx.9584.1.S1_at11/111+35359935..35362156WRKY DNA binding domain containing protein, expressed
LOC_Os01g60600OsAffx.9584.1.S1_x_at11/111+35359935..35362156WRKY DNA binding domain containing protein, expressed
LOC_Os01g60610NANA1+35364534..35367750retrotransposon protein, putative, unclassified
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified
LOC_Os01g60630OsAffx.20484.2.S1_at1/111+35379667..35380435hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9584.1.S1_at--995--7331Chr01:35360508..35360532 (25 bp)
GTGCAGTTACCACCGGGAGCGCAGA
LOC_Os01g60600
OsAffx.9584.1.S1_at--756--1651Chr01:35360491..35360515 (25 bp)
AGCGCAGATGCCCCGCGCAGAAGCA
LOC_Os01g60600
OsAffx.9584.1.S1_at--705--1811Chr01:35360414..35360438 (25 bp)
ACCCACGAGCACACGTGCCTGCAGG
LOC_Os01g60600
OsAffx.9584.1.S1_at--400--3911Chr01:35360262..35360286 (25 bp)
CGGCCTGCAGCCTCAGTTCGTGGAC
LOC_Os01g60600
OsAffx.9584.1.S1_at--815--9031Chr01:35360257..35360281 (25 bp)
TGCAGCCTCAGTTCGTGGACCACCG
LOC_Os01g60600
OsAffx.9584.1.S1_at--880--7531Chr01:35359985..35360009 (25 bp)
GGGCCTTTCGGCACGGACAGCAACT
LOC_Os01g60600
OsAffx.9584.1.S1_at--297--10271Chr01:35359980..35360004 (25 bp)
TTTCGGCACGGACAGCAACTCGTAC
LOC_Os01g60600
OsAffx.9584.1.S1_at--544--8251Chr01:35359976..35360000 (25 bp)
GGCACGGACAGCAACTCGTACGACG
LOC_Os01g60600
OsAffx.9584.1.S1_at--1023--1891Chr01:35359973..35359997 (25 bp)
ACGGACAGCAACTCGTACGACGGAA
LOC_Os01g60600
OsAffx.9584.1.S1_at--258--2031Chr01:35359969..35359993 (25 bp)
ACAGCAACTCGTACGACGGAAACCT
LOC_Os01g60600
OsAffx.9584.1.S1_at--508--3231Chr01:35359965..35359989 (25 bp)
CAACTCGTACGACGGAAACCTGACG
LOC_Os01g60600
Target Sequence 
GTGCAGTTACCACCGGGAGCGCAGATGCCCCGCGCAGAAGCACGTGCAGCAGCGCGACGGCGACGACGTCCCGGCGCTGC
ACGTCGTCGTCTACACCCACGAGCACACGTGCCTGCAGGGGGCGCCCGCCGAGCTTCCCGACGCGGCGACGAACGGTGGC
GCCGCCGCCGCCGCGTCGCCGGACTACTTCCCCGCCGGCGGCGAGACGCCGTCGTCGCTGCGGCGGCTCCGGGGCGTCGG
CGGCGGCGGCCTGCAGCCTCAGTTCGTGGACCACCGCGCCGCCATGGAGGAGCGCGAGCGCCAGGTGCTCGTCTCGTCCC
TCGCCCGCGTGCTGCAGGGGCGGCAGTGCTACGACGACGACGACGACGACGACACCGACGTCGCCTCCCTCGGCGCCGTG
CACGCGCGCGCGCCTGCGGCGGCGGCGCCGGTCGCCGCGTCGTCGTCGTCGTCCGGGCCCGTCGACGCTGCCGGCGAGGA
GCTGGACGTCATGGACTACGACATGACGGACGCGCTGTTCTGGGGGCCTTTCGGCACGGACAGCAACTCGTACGACGGAA
ACCTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis