Browse Element(s) Details


OsAffx.9719.1.S1_x_at

Description tigr:9629.m00776
TID=OsAffx.9719.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0838011/11Transferase family protein, expressed
LOC_Os05g086402/11Transferase family protein, expressed
LOC_Os06g394701/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed
LOC_Os01g08350NANA1+4092658..4093051ATP synthase alpha chain, mitochondrial, putative
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9719.1.S1_x_at--1083--5411Chr01:4108068..4108092 (25 bp)
GAACCAGTACAACGCGGAGGCGCAC
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--640--3931Chr01:4108015..4108039 (25 bp)
CGGCGTTCGAGGTGCTGATCGCCAA
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--1051--7892Chr05:4713950..4713974 (25 bp)
GGTTCTACGGCAACTGCTACTACAT
LOC_Os05g08640
OsAffx.9719.1.S1_x_at--705--2553Chr06:23438884..23438903 (20 bp)
AACTGCTACTACATCATGCGCGTCT
LOC_Os06g39470
OsAffx.9719.1.S1_x_at--955--8931Chr01:4107805..4107829 (25 bp)
TGACGGAGGTGGTGAAGATCATCAA
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--556--2811Chr01:4107791..4107815 (25 bp)
AAGATCATCAAGGACGGGAAGCGGC
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--130--3971Chr01:4107767..4107791 (25 bp)
CGGATGCCGTCGGAGTTCTCCCGGT
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--823--9291Chr01:4107698..4107722 (25 bp)
TCCGACTACCGGACGCTGCTGGTGT
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--66--3891Chr01:4107680..4107704 (25 bp)
CTGGTGTCGGACTGGACCCGGCTGG
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--158--1911Chr01:4107670..4107694 (25 bp)
ACTGGACCCGGCTGGGCTTCGCCGA
LOC_Os01g08380
OsAffx.9719.1.S1_x_at--1053--7271Chr01:4107611..4107635 (25 bp)
GTGCCACTGACGAACCTGGACTACA
LOC_Os01g08380
Target Sequence 
GAACCAGTACAACGCGGAGGCGCACGCCGCCGCCGCGGGCGTCGCCAGGTGCTCGGCGTTCGAGGTGCTGATCGCCAAGG
CGTGGCGGAGCCGGACGCGCGCGGCGGGGTTCGAGCCCGACACCACCGTCAACCTCTGCTTCGCCATGAACGCGCGCCCC
CTCCTCCACGCCTCCCTCCCGCGCGGCGGCGCCGGGTTCTACGGCAACTGCTACTACATCATGCGCGTCTCCGCCCCCGC
CGGGAAGGTGGCGGGCTCGTCGGTGACGGAGGTGGTGAAGATCATCAAGGACGGGAAGCGGCGGATGCCGTCGGAGTTCT
CCCGGTGGGCCGCCGGCGACATGGCCGGCGGCGACCCGTACCAGATCACCTCCGACTACCGGACGCTGCTGGTGTCGGAC
TGGACCCGGCTGGGCTTCGCCGAGGTGGACTACGGGTGGGGCCCACCGGCCCACGTCGTGCCACTGACGAACCTGGACTA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9719.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis