Browse Element(s) Details


OsAffx.980.1.S1_at

Description gb:NM_191097.1
DB_XREF= gi:34909277
GEN=P0454H12.22
TID=OsAffx.980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0454H12.22 (P0454H12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6028011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60250OsAffx.21647.1.S1_at11/111+35170523..35172361pentatricopeptide, putative
LOC_Os01g60260Os.14790.1.S1_at10/111+35179157..35182769KH domain-containing protein, putative, expressed
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60290Os.51620.1.S1_at11/111+35212197..35215541expressed protein
LOC_Os01g60310NANA1+35217538..35218707hypothetical protein
LOC_Os01g60330OsAffx.9457.1.S1_at11/111+35226005..35228563Protein kinase domain containing protein, expressed
LOC_Os01g60340Os.31128.1.S1_x_at1/111+35229152..35233804C2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.980.1.S1_at--1129--4751Chr01:35202480..35202504 (25 bp)
GCTGCAACGAGTTTCCTCCGGAAAA
LOC_Os01g60280
OsAffx.980.1.S1_at--835--8491Chr01:35202452..35202476 (25 bp)
TGGCAAGGTTTAACCATCCCGGGCT
LOC_Os01g60280
OsAffx.980.1.S1_at--1072--5371Chr01:35202417..35202441 (25 bp)
GAAGAATTTTGTGGCCGCTTCAACG
LOC_Os01g60280
OsAffx.980.1.S1_at--816--10131Chr01:35202361..35202415 (25 bp)
TATGCCTCGAGGATTGCTGGTTAAA
LOC_Os01g60280
OsAffx.980.1.S1_at--328--10511Chr01:35202302..35202326 (25 bp)
TTCAACCAGATTCCAGTGCGCATTC
LOC_Os01g60280
OsAffx.980.1.S1_at--562--8291Chr01:35202255..35202279 (25 bp)
GGCATTGCTCAACCGAACCTGGATA
LOC_Os01g60280
OsAffx.980.1.S1_at--1099--6491Chr01:35201966..35202258 (25 bp)
GATATCAGATATCCGAGCCGCGGGC
LOC_Os01g60280
OsAffx.980.1.S1_at--558--8671Chr01:35201929..35201953 (25 bp)
TGTGATGCGTGCTTTGTGACCAACA
LOC_Os01g60280
OsAffx.980.1.S1_at--346--431Chr01:35201885..35201909 (25 bp)
ATCTTGGTCGCTTGTCCAGAATCAA
LOC_Os01g60280
OsAffx.980.1.S1_at--609--5391Chr01:35201802..35201826 (25 bp)
GAAGCATCCTTCCATACCTGGTTAT
LOC_Os01g60280
OsAffx.980.1.S1_at--1113--9991Chr01:35201726..35201750 (25 bp)
TAGCGACTCTGATTGCTTGGACAAT
LOC_Os01g60280
Target Sequence 
GCTGCAACGAGTTTCCTCCGGAAAACCTTGGCAAGGTTTAACCATCCCGGGCTCGCAGAAGGAGAAGAATTTTGTGGCCG
CTTCAACGATATGCCTCGAGGATTGCTGGTTAAAGGAAGGGGCGGTCCGCTCCATTGCGCCATCCCTCTTCAACCAGATT
CCAGTGCGCATTCGGAAGAGAAGAACGGTTGCCGAGGCATTGCTCAACCGAACCTGGATATCAGATATCCGAGCCGCGGG
CTCCCACATCCTCTGTGATGCGTGCTTTGTGACCAACACGAAGAAACCATCGATCACATCTTGGTCGCTTGTCCAGAATC
AAGGCAACTTGGTGGTGGGCGCTGCGCGCGATAAGGCTGCAGGATTGCCTGCCAATAAACGAAGCATCCTTCCATACCTG
GTTATGCAGCGCAAGGGAGAAGGTCCACAAACCACATCGTCGGGGATTCGACACAATAGCGACTCTGATTGCTTGGACAA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis