Browse Element(s) Details


OsAffx.9826.1.S1_at

Description tigr:9636.m03260
TID=OsAffx.9826.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g032001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03180Os.27402.1.S1_at11/114+1316762..1323620Leucine Rich Repeat family protein, expressed
LOC_Os04g03190Os.8747.3.S1_x_at1/114+1330680..1336174retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03200OsAffx.9826.1.S1_at1/114+1339232..1344203hypothetical protein
LOC_Os04g03210OsAffx.3709.1.S1_at11/114+1345753..1349313Leucine Rich Repeat family protein
LOC_Os04g03220OsAffx.13094.2.S1_at10/114+1353230..1354970hypothetical protein
LOC_Os04g03230OsAffx.13637.1.S1_at11/114+1359436..1361527hypothetical protein
LOC_Os04g03230OsAffx.17226.1.S1_at1/114+1359436..1361527hypothetical protein
LOC_Os04g03240NANA4+1365662..1367213Transposable element protein, putative, Transposase_28
LOC_Os04g03250OsAffx.22699.1.S1_x_at1/114+1368770..1375575retrotransposon protein, putative, unclassified
LOC_Os04g03250OsAffx.8201.1.S1_x_at1/114+1368770..1375575retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9826.1.S1_at--1002--2071Chr08:20079177..20079201 (25 bp)
ACATAGCTCGGTTACAAGTCTTAGT
NONE
OsAffx.9826.1.S1_at--137--2851Chr08:20079162..20079186 (25 bp)
AAGTCTTAGTGCTAGATCCATCTTT
NONE
OsAffx.9826.1.S1_at--123--4871Chr08:20079152..20079176 (25 bp)
GCTAGATCCATCTTTAATTCCTGAT
NONE
OsAffx.9826.1.S1_at--719--92Chr08:20079136..20079160 (25 bp)
ATTCCTGATGTGGTTGATGTGGGCA
NONE
OsAffx.9826.1.S1_at--343--6311Chr08:20079058..20079082 (25 bp)
GATGAGCCTGAACCCATGGATATGA
NONE
OsAffx.9826.1.S1_at--756--2991Chr08:20078929..20078953 (25 bp)
AATGTTGCTGGCCAGTGTAGTCAGA
NONE
OsAffx.9826.1.S1_at--295--2791Chr08:20078905..20078929 (25 bp)
AAGAGTGCTACTTCTTTGCCTACTA
NONE
OsAffx.9826.1.S1_at--1015--10271Chr08:20078891..20078915 (25 bp)
TTTGCCTACTACTCAGACTTTGTTG
NONE
OsAffx.9826.1.S1_at--527--3731Chr08:20078883..20078907 (25 bp)
CTACTCAGACTTTGTTGTTGCCAGA
NONE
OsAffx.9826.1.S1_at--684--2911Chr08:20078812..20078836 (25 bp)
AAGGATACTTCTATGGTGGAGCCAG
NONE
OsAffx.9826.1.S1_at--58--7531Chr08:20078797..20078821 (25 bp)
GTGGAGCCAGTTCAGTCTCAAGACA
NONE
Target Sequence 
ACATAGCTCGGTTACAAGTCTTAGTGCTAGATCCATCTTTAATTCCTGATGTGGTTGATGTGGGCATTGGTGATTATTTG
TACGAACTATCTTTTAAAGTGAAGCCTAAAAATGGGCATGATGAGCCTGAACCCATGGATATGAAAAATGATGGTGATAG
GGATGAGGAAAAGAATGATGAAGGAAGTAAGATGCATGGTTTGAGTAAGGAATCAGATTTTATTAATTCTGACAAAGGTA
ATAAGGTGAATGTTGCTGGCCAGTGTAGTCAGAAGAGTGCTACTTCTTTGCCTACTACTCAGACTTTGTTGTTGCCAGAG
TCTAATGGTTTGAATGTGTCGGATGAAGAATATGATGGTTTAGTCAAGGATACTTCTATGGTGGAGCCAGTTCAGTCTCA
AGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis