Browse Element(s) Details


Os.10028.2.S1_at

Description gb:AK061121.1
DB_XREF= gi:32971139
TID=Os.10028.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G03, full insert sequence.
FL= gb:AK061121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2992011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29880OsAffx.26240.1.S1_at11/114+17628612..17631189hypothetical protein
LOC_Os04g29890Os.27037.1.A1_at1/114+17631961..17636147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29900NANA4+17638702..17639961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29910Os.14491.2.S1_x_at5/114+17640191..17642398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29910Os.47463.1.S1_x_at4/114+17640191..17642398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29920Os.10028.2.S1_at11/114+17650668..17652508Reticulon family protein, expressed
LOC_Os04g29920Os.10028.1.S1_x_at10/114+17650668..17652508Reticulon family protein, expressed
LOC_Os04g29930NANA4+17658658..17662825Protein kinase domain containing protein
LOC_Os04g29940Os.14919.1.S1_at6/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940Os.56216.1.S1_at2/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940OsAffx.29313.1.S1_at1/114+17670816..17676743transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10028.2.S1_at--878--10591Chr04:17652399..17652423 (25 bp)
TTCGATCACTAGTTTTCAGGGTTTT
LOC_Os04g29920
Os.10028.2.S1_at--76--6811Chr04:17652419..17652443 (25 bp)
GTTTTTTCTTTATGTCCACTGCGAA
LOC_Os04g29920
Os.10028.2.S1_at--260--10391Chr04:17652422..17652446 (25 bp)
TTTTCTTTATGTCCACTGCGAAATG
LOC_Os04g29920
Os.10028.2.S1_at--648--9211Chr04:17652433..17652457 (25 bp)
TCCACTGCGAAATGGAGTGACAATA
LOC_Os04g29920
Os.10028.2.S1_at--267--3831Chr04:17652437..17652461 (25 bp)
CTGCGAAATGGAGTGACAATATTGT
LOC_Os04g29920
Os.10028.2.S1_at--747--6111Chr04:17652447..17652471 (25 bp)
GAGTGACAATATTGTGTAAGAACAC
LOC_Os04g29920
Os.10028.2.S1_at--31--2191Chr04:17652468..17652492 (25 bp)
ACACAATAGCATTCAGATTTCTGAG
LOC_Os04g29920
Os.10028.2.S1_at--52--10531Chr04:17652479..17652503 (25 bp)
TTCAGATTTCTGAGAACCTCGTTTG
LOC_Os04g29920
Os.10028.2.S1_at--1006--3431Chr04:17652481..17652505 (25 bp)
CAGATTTCTGAGAACCTCGTTTGGC
LOC_Os04g29920
Os.10028.2.S1_at--532--6531Chr04:17652483..17652507 (25 bp)
GATTTCTGAGAACCTCGTTTGGCTA
LOC_Os04g29920
Os.10028.2.S1_at--389--191Chr04:17652484..17652508 (25 bp)
ATTTCTGAGAACCTCGTTTGGCTAT
LOC_Os04g29920
Target Sequence 
TTCGATCACTAGTTTTCAGGGTTTTTTCTTTATGTCCACTGCGAAATGGAGTGACAATATTGTGTAAGAACACAATAGCA
TTCAGATTTCTGAGAACCTCGTTTGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10028.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis