Browse Element(s) Details


Os.10046.1.S1_at

Description gb:AU082880
DB_XREF= gi:7212577
DB_XREF=AU082880
CLONE=C53803
TID=Os.10046.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10046 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2970011/11hypothetical protein
LOC_Os11g304001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29710OsAffx.22314.2.S1_at11/117+17460700..17460948hypothetical protein
LOC_Os07g29710OsAffx.22314.1.S1_x_at4/117+17460700..17460948hypothetical protein
LOC_Os07g29720OsAffx.28663.1.S1_at11/117+17469440..17470378hypothetical protein
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10046.1.S1_at--7--5531Chr07:17453314..17453338 (25 bp)
GAAAAGTGGCGTCCTTGTGTTCAAC
LOC_Os07g29700
Os.10046.1.S1_at--444--6751Chr07:17453296..17453320 (25 bp)
GTTCAACGGCGATACAGACGAGGCT
LOC_Os07g29700
Os.10046.1.S1_at--922--1871Chr07:17453279..17453303 (25 bp)
ACGAGGCTGGGAGACTTCGAGTCCT
LOC_Os07g29700
Os.10046.1.S1_at--831--3071Chr07:17453215..17453239 (25 bp)
AATCAGCCGGTGATGATCTGTAGCC
LOC_Os07g29700
Os.10046.1.S1_at--467--6411Chr07:17453201..17453225 (25 bp)
GATCTGTAGCCTTTACCAAGTAATT
LOC_Os07g29700
Os.10046.1.S1_at--6--10252Chr11:17164964..17165035 (24 bp)
TTTGGTTTTATTAATCATCCGGTGA
LOC_Os11g30400
Os.10046.1.S1_at--734--551Chr07:17453162..17453186 (25 bp)
ATCCGGTGATTAACCTCTTATTCTG
LOC_Os07g29700
Os.10046.1.S1_at--1056--10371Chr07:17453128..17453152 (25 bp)
TTTTAAGCGGTGAACGCCACTTCTT
LOC_Os07g29700
Os.10046.1.S1_at--672--3651Chr07:17453106..17453130 (25 bp)
CTTCTCTTTATTTTTCACCACACTG
LOC_Os07g29700
Os.10046.1.S1_at--702--3331Chr07:17453071..17453095 (25 bp)
CACTGTGCGTGCTGACGTGTGCGAT
LOC_Os07g29700
Os.10046.1.S1_at--350--10371Chr07:17453037..17453061 (25 bp)
TTTTGCACAACGATATTAGCCTTTG
LOC_Os07g29700
Target Sequence 
GAAAAGTGGCGTCCTTGTGTTCAACGGCGATACAGACGAGGCTGGGAGACTTCGAGTCCTTTCTCTCTNTTTTTNTCATC
TATTTTNCCTAACTAATTNAATCAGCCGGTGATGATCTGTAGCCTTTACCAAGTAATTTGGTTTTATTAATCATCCGGTG
ATTAACCTCTTATTCTGTTAGAATTTTTTTAAGCGGTGAACGCCACTTCTTCTCTTTATTTTTCACCACACTGAACTTTT
TTTCACTGTGCGTGCTGACGTGTGCGATGTTGTGTTTTTTTGCACAACGATATTAGCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis