Browse Element(s) Details


Os.10125.1.S1_a_at

Description gb:AK065239.1
DB_XREF= gi:32975257
TID=Os.10125.1
CNT=72
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.10125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002I05, full insert sequence.
FL= gb:AK072282.1 gb:AK061506.1 gb:AK065239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4856011/11Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48530NANA2+29702623..29703243hypothetical protein
LOC_Os02g48540NANA2+29708013..29709564retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g48550OsAffx.18204.2.A1_at9/112+29712310..29713694hypothetical protein
LOC_Os02g48560Os.51593.1.S1_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48560Os.10125.1.S1_a_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009266biological_processresponse to temperature stimulus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016720molecular_functiondelta12-fatty acid dehydrogenase activity
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10125.1.S1_a_at--1009--4431Chr02:29719739..29719763 (25 bp)
GCCATCAAGTGCAAAGTAGGCGGAT
LOC_Os02g48560
Os.10125.1.S1_a_at--206--911Chr02:29719713..29719737 (25 bp)
AGGCGTGTGTCATGCCTGTGGATTT
LOC_Os02g48560
Os.10125.1.S1_a_at--1102--6931Chr02:29719688..29719712 (25 bp)
GTAGTCTATGTATGTGTCAGCTGCT
LOC_Os02g48560
Os.10125.1.S1_a_at--853--8911Chr02:29719664..29719688 (25 bp)
TGAGCTCCGGTGTCGCAGCCTTGGT
LOC_Os02g48560
Os.10125.1.S1_a_at--777--1591Chr02:29719648..29719672 (25 bp)
AGCCTTGGTCCCTGTCGTGTTATTT
LOC_Os02g48560
Os.10125.1.S1_a_at--921--3871Chr02:29719637..29719661 (25 bp)
CTGTCGTGTTATTTCCATCGTTTTT
LOC_Os02g48560
Os.10125.1.S1_a_at--347--3791Chr02:29719608..29719632 (25 bp)
CTCCGCCATTGTTCGGTTTAGGTGT
LOC_Os02g48560
Os.10125.1.S1_a_at--661--6671Chr02:29719598..29719622 (25 bp)
GTTCGGTTTAGGTGTTGTCATGGTC
LOC_Os02g48560
Os.10125.1.S1_a_at--1021--9271Chr02:29719569..29719593 (25 bp)
TCCGTGTGGACGACGTGTCTTGTGC
LOC_Os02g48560
Os.10125.1.S1_a_at--702--7451Chr02:29719555..29719579 (25 bp)
GTGTCTTGTGCGGTTTGTCTGTCAT
LOC_Os02g48560
Os.10125.1.S1_a_at--759--10791Chr02:29719541..29719565 (25 bp)
TTGTCTGTCATTGAGTTGGCTCCGT
LOC_Os02g48560
Target Sequence 
GCCATCAAGTGCAAAGTAGGCGGATCAGGCGTGTGTCATGCCTGTGGATTTGTAGTCTATGTATGTGTCAGCTGCTGAGC
TCCGGTGTCGCAGCCTTGGTCCCTGTCGTGTTATTTCCATCGTTTTTTTCCCTCCGCCATTGTTCGGTTTAGGTGTTGTC
ATGGTCGGCGTCCGTGTGGACGACGTGTCTTGTGCGGTTTGTCTGTCATTGAGTTGGCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10125.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis