Browse Element(s) Details


Os.10136.1.S1_at

Description gb:AF093635.1
DB_XREF= gi:3885893
GEN=PSI-H
TID=Os.10136.1
CNT=47
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10136 (NCBI UniGene Cluster)
DEF=Oryza sativa photosystem-1 H subunit GOS5 (PSI-H) mRNA, complete cds.
PROD=photosystem-1 H subunit GOS5
FL= gb:AK060254.1 gb:AF093635.1 gb:AK061603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4863011/11Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009538cellular_componentphotosystem I reaction center
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10136.1.S1_at--413--5971Chr05:27795741..27795765 (25 bp)
GAGAAGAGCGTCTACTTCGACCTCG
LOC_Os05g48630
Os.10136.1.S1_at--706--10631Chr05:27795756..27795780 (25 bp)
TTCGACCTCGAGGACATCGGCAACA
LOC_Os05g48630
Os.10136.1.S1_at--848--7031Chr05:27795824..27795926 (25 bp)
GTACAACCCTCTCCAGAGCAAGTTC
LOC_Os05g48630
Os.10136.1.S1_at--284--1491Chr05:27795918..27795942 (25 bp)
AGCAAGTTCTTCGAGACGTTCGCGG
LOC_Os05g48630
Os.10136.1.S1_at--875--10651Chr05:27796039..27796063 (25 bp)
TTCCGATCAAGAAGGGCCCGCAGCT
LOC_Os05g48630
Os.10136.1.S1_at--211--8411Chr05:27796077..27796101 (25 bp)
GGCCCACGCGGCAAGATCTAAATTA
LOC_Os05g48630
Os.10136.1.S1_at--316--9851Chr05:27796095..27796119 (25 bp)
TAAATTAAATTCCTCGTCTCTGCCT
LOC_Os05g48630
Os.10136.1.S1_at--879--9671Chr05:27796119..27796143 (25 bp)
TCACCTTCTTCTTGATCCGATCCAT
LOC_Os05g48630
Os.10136.1.S1_at--918--571Chr05:27796142..27796166 (25 bp)
ATCCATGCAAATCCTCTGTACTGTA
LOC_Os05g48630
Os.10136.1.S1_at--1145--8411Chr05:27796182..27796206 (25 bp)
GGCCGGATCGCCATGGATTAATTCC
LOC_Os05g48630
Os.10136.1.S1_at--318--3171Chr05:27796228..27796252 (25 bp)
AATTGTACTATTCCTATGGCTATAT
LOC_Os05g48630
Target Sequence 
GAGAAGAGCGTCTACTTCGACCTCGAGGACATCGGCAACACCACCGGGCAGTGGGACCTGTACGGCTCCGACGCGCCGTC
GCCGTACAACCCTCTCCAGAGCAAGTTCTTCGAGACGTTCGCGGGGCCCTTCACCAAGAGGGGGCTCCTGCTCAAGTTCC
TGCTGCTCGGCGGCGGATCGCTGGTGGCCTACGTCAGCGCGTCGGCGTCGCCNGACCTGCTTCCGATCAAGAAGGGCCCG
CAGCTGCCGCCGACGCCCGGCCCACGCGGCAAGATCTAAATTAAATTCCTCGTCTCTGCCTCACCTTCTTCTTGATCCGA
TCCATCCATGCAAATCCTCTGTACTGTACTGCTAGTCCCCCATGGCCGGATCGCCATGGATTAATTCCCCCTGTTTATGA
TGTTGATATAATTGTACTATTCCTATGGCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis