Browse Element(s) Details


OsAffx.27371.1.S1_at

Description tigr:9633.m04551
TID=OsAffx.27371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Tub family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4867011/11Tub family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27371.1.S1_at--343--2651Chr05:27811881..27811905 (25 bp)
AACCAGCCGCCATACGATGATGCAA
LOC_Os05g48670
OsAffx.27371.1.S1_at--230--2731Chr05:27811913..27811937 (25 bp)
AAGCACTCGATCTAGCCAGCGTTTT
LOC_Os05g48670
OsAffx.27371.1.S1_at--522--4411Chr05:27811927..27811951 (25 bp)
GCCAGCGTTTTGGAAGTACCCACCG
LOC_Os05g48670
OsAffx.27371.1.S1_at--802--10391Chr05:27811952..27811976 (25 bp)
TTTTGGAAGTAGACGGATCTGCCCC
LOC_Os05g48670
OsAffx.27371.1.S1_at--684--5111Chr05:27812062..27812086 (25 bp)
GCACAATGGAATGCCCTTCAACTCA
LOC_Os05g48670
OsAffx.27371.1.S1_at--1137--7631Chr05:27812095..27812119 (25 bp)
GGGAGAATTCCCTCAAGACAAAATC
LOC_Os05g48670
OsAffx.27371.1.S1_at--229--6151Chr05:27812123..27812147 (25 bp)
GAGGTGCACAGGAACCACTGTCTTA
LOC_Os05g48670
OsAffx.27371.1.S1_at--24--3911Chr05:27812186..27812210 (25 bp)
CTGGTGCTTAAACTTTCATGGGCGA
LOC_Os05g48670
OsAffx.27371.1.S1_at--85--8391Chr05:27812206..27812230 (25 bp)
GGCGAGTGACAGTTGCATCCGTGAA
LOC_Os05g48670
OsAffx.27371.1.S1_at--650--2731Chr05:27812229..27812253 (25 bp)
AAGAATTTCCAGCTTGTGGCCACAG
LOC_Os05g48670
OsAffx.27371.1.S1_at--934--5531Chr05:27812289..27812313 (25 bp)
GAAACAGTTATCCTGCAGTTTGGGA
LOC_Os05g48670
Target Sequence 
AACCAGCCGCCATACGATGATGCAAAAACATCAAGCACTCGATCTAGCCAGCGTTTTGGAAGTACCCACCGTTTTGGAAG
TAGACGGATCTGCCCCCAAATATCGGCAGGCAACTTCAATGTTGGGCAGATCTCATACAAATACAACCTTCTTAAATCTA
GGGGACCTAGGAGGATGTTTTGCACAATGGAATGCCCTTCAACTCAAGAAACCTGGGAGAATTCCCTCAAGACAAAATCT
TTGAGGTGCACAGGAACCACTGTCTTAAGGAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTAAACTT
TCATGGGCGAGTGACAGTTGCATCCGTGAAGAATTTCCAGCTTGTGGCCACAGCTGACCCCAGCCATCCAGATAGCGTTG
GAGACGAGGAAACAGTTATCCTGCAGTTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis