Browse Element(s) Details


OsAffx.15154.1.S1_at

Description tigr:9633.m04548
TID=OsAffx.15154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g486508/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15154.1.S1_at--116--9671NONE
TCAGCCCGTCGCAGTTGGCGCAGAT
NONE
OsAffx.15154.1.S1_at--1050--4531NONE
GCCCGTCGCAGTTGGCGCAGATCGA
NONE
OsAffx.15154.1.S1_at--997--4111NONE
CGCAGTTGGCGCAGATCGACGACCT
NONE
OsAffx.15154.1.S1_at--712--8331Chr05:27800578..27800602 (25 bp)
GGCTGCGCACCGTGAAGCGCGCGGT
LOC_Os05g48650
OsAffx.15154.1.S1_at--442--7731Chr05:27800556..27800580 (25 bp)
GGTGGAGATCCTCGAGCCGGCGCAG
LOC_Os05g48650
OsAffx.15154.1.S1_at--402--8891Chr05:27800355..27800379 (25 bp)
TGAGTGGTGTGCTGGGACGTGGCTG
LOC_Os05g48650
OsAffx.15154.1.S1_at--704--1911Chr05:27800339..27800363 (25 bp)
ACGTGGCTGGGCAGGACTAGCCCTC
LOC_Os05g48650
OsAffx.15154.1.S1_at--1110--8631Chr05:27800332..27800356 (25 bp)
TGGGCAGGACTAGCCCTCTGTTAAG
LOC_Os05g48650
OsAffx.15154.1.S1_at--9--5011Chr05:27800329..27800353 (25 bp)
GCAGGACTAGCCCTCTGTTAAGAGA
LOC_Os05g48650
OsAffx.15154.1.S1_at--588--931Chr05:27800327..27800351 (25 bp)
AGGACTAGCCCTCTGTTAAGAGAAA
LOC_Os05g48650
OsAffx.15154.1.S1_at--299--5711Chr05:27800325..27800349 (25 bp)
GACTAGCCCTCTGTTAAGAGAAAAA
LOC_Os05g48650
Target Sequence 
TCAGCCCGTCGCAGTTGGCGCAGATCGACGACCTCCAGCGCCGGACCGTCGCCGAGGAGGACGGGCTGTCGCGGGAGATG
GCGCTGGTGCAGGAGGGCCACGGCGCGGTCGCCGTCGGCGGCGGGATCGACGTCGACGGGATAGTGGGCCGGGTGCGGGG
CGTGCTCGGCCGCGCCGACGCGCTCCGGCTGCGCACCGTGAAGCGCGCGGTGGAGATCCTCGAGCCGGCGCAGGCGGCCG
AGCTGCTCGTCGCCGCCGCCGACATGGAGATCGGCTTCCGGGAGTTCGGGCTCAAGTACAGCTCGGCCCGCAGCGACTAG
CGCTTCCACCCCGCGGCCCAGCTTACAGGCCCAGTTTTTTTCTCCAATACTGTTGGTTTTACTGGGCCGAAAAAGCCATA
AAATCTTAGTGAGTGGTGTGCTGGGACGTGGCTGGGCAGGACTAGCCCTCTGTTAAGAGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis