Browse Element(s) Details


Os.35356.1.S1_at

Description gb:AK122091.1
DB_XREF= gi:37991737
TID=Os.35356.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124C04, full insert sequence.
FL= gb:AK067862.1 gb:AK122091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g48710OsAffx.31233.1.S1_at11/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_s_at9/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_at1/115+27837449..27840474expressed protein
LOC_Os05g48720OsAffx.1319.1.S1_at1/115+27840877..27843589transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35356.1.S1_at--669--5711Chr05:27817290..27817314 (25 bp)
GACTGCACCCGATGGTATTGGCGCA
LOC_Os05g48690
Os.35356.1.S1_at--766--10851Chr05:27817307..27817331 (25 bp)
TTGGCGCAGCGGAATTGGTTTCCTC
LOC_Os05g48690
Os.35356.1.S1_at--241--1231Chr05:27818812..27818836 (25 bp)
AGTTCATTAGATGGCCTTGCTGACC
LOC_Os05g48690
Os.35356.1.S1_at--516--10851Chr05:27818851..27818875 (25 bp)
TTGGCACTTGGCAGCGATTCATTGT
LOC_Os05g48690
Os.35356.1.S1_at--454--6571Chr05:27818866..27818890 (25 bp)
GATTCATTGTAGTTCGTAGCCTGGT
LOC_Os05g48690
Os.35356.1.S1_at--999--3571Chr05:27818940..27818964 (25 bp)
CATTGGTGCCTGTGGGTTGTTAATC
LOC_Os05g48690
Os.35356.1.S1_at--854--2311Chr05:27819052..27819076 (25 bp)
AAAGGTGTTGCAATCTTTCCCTGTC
LOC_Os05g48690
Os.35356.1.S1_at--402--4271Chr05:27819071..27819095 (25 bp)
CCTGTCGTTGTTGATCGCCTTGAAT
LOC_Os05g48690
Os.35356.1.S1_at--715--6911Chr05:27819099..27819123 (25 bp)
GTAGGAGTAGCAACTTTCTGCGGAA
LOC_Os05g48690
Os.35356.1.S1_at--779--8191Chr05:27819120..27819144 (25 bp)
GGAAGTTCTGGGAGCATTCTGCAAC
LOC_Os05g48690
Os.35356.1.S1_at--761--351Chr05:27819156..27819180 (25 bp)
ATAAGCCCCTGATGTTGCGTTGACA
LOC_Os05g48690
Target Sequence 
GACTGCACCCGATGGTATTGGCGCAGCGGAATTGGTTTCCTCTGTCGCTGCGCTGCCTTTCCTCTCCACCTCCACCTACA
TATGATGCTGAGGAGATGTTGAGATTATCAGTGTGAAGTTCATTAGATGGCCTTGCTGACCATGGGAAGACTGGTTTGGC
ACTTGGCAGCGATTCATTGTAGTTCGTAGCCTGGTAGTATATGGAAATTGAAGACTAGAAGTTCCTAGTGTAAAGCAATG
TTGACATTGGTGCCTGTGGGTTGTTAATCTGTTTACCTATTGTTTTATTGACATTTTAGGCATGTAACTCTGACCTCNTG
TTTTATTTTTCTTTCTTAAAAAAAANGTGTATCGACAAAAGGTGTTGCAATCTTTCCCTGTCGTTGTTGATCGCCTTGAA
TCGTGTAGGAGTAGCAACTTTCTGCGGAAGTTCTGGGAGCATTCTGCAACAGTAATCGTGTATAAGCCCCTGATGTTGCG
TTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis