Browse Element(s) Details


Os.10148.1.S1_at

Description gb:AK061922.1
DB_XREF= gi:32971940
TID=Os.10148.1
CNT=94
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.10148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B10, full insert sequence.
FL= gb:AK101956.1 gb:AK061922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4639011/11DnaJ protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46360OsAffx.28186.2.S1_x_at1/114+27267833..27268693hypothetical protein
LOC_Os04g46370Os.27114.1.S1_at10/114+27275382..27278873L-asparaginase, putative, expressed
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein
LOC_Os04g46390Os.10148.1.S1_at11/114+27286392..27290953DnaJ protein homolog, putative, expressed
LOC_Os04g46400Os.54929.1.S1_at11/114+27298110..27299245AP2 domain containing protein, expressed
LOC_Os04g46410OsAffx.14299.2.S1_at11/114+27304305..27305048AP2 domain containing protein, expressed
LOC_Os04g46420OsAffx.26484.1.S1_at10/114+27306715..27306997hypothetical protein
LOC_Os04g46430OsAffx.26637.1.S1_x_at4/114+27310208..27311194hypothetical protein
LOC_Os04g46430OsAffx.26637.2.S1_x_at2/114+27310208..27311194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10148.1.S1_at--948--10091Chr04:27290146..27290170 (25 bp)
TAGGCAGCTCCTAATCAAGGCAAAT
LOC_Os04g46390
Os.10148.1.S1_at--606--8891Chr04:27290337..27290361 (25 bp)
TGAGGGAATGCCACACCATGGCCGG
LOC_Os04g46390
Os.10148.1.S1_at--94--1091Chr04:27290372..27290396 (25 bp)
AGGGCCGTCTCTTTGTGGAATTCAA
LOC_Os04g46390
Os.10148.1.S1_at--872--8811Chr04:27290397..27290421 (25 bp)
TGTTGAGTTCCCTGAATCTGGTGTA
LOC_Os04g46390
Os.10148.1.S1_at--41--9011Chr04:27290409..27290433 (25 bp)
TGAATCTGGTGTACTCTCCCGTGAC
LOC_Os04g46390
Os.10148.1.S1_at--541--9171Chr04:27290437..27290461 (25 bp)
TGCCGGGCACTTGAGATGATCCTAC
LOC_Os04g46390
Os.10148.1.S1_at--905--6271Chr04:27290451..27290475 (25 bp)
GATGATCCTACCACCTAAACCTGGG
LOC_Os04g46390
Os.10148.1.S1_at--1113--611Chr04:27290606..27290630 (25 bp)
ATGCTCCAAGAGTACAGTGTGCTCA
LOC_Os04g46390
Os.10148.1.S1_at--98--1471Chr04:27290637..27290661 (25 bp)
AGAAGTGTCACTTTCTGGCGCAAGT
LOC_Os04g46390
Os.10148.1.S1_at--616--8391Chr04:27290653..27290677 (25 bp)
GGCGCAAGTGATGATACTCCATGTA
LOC_Os04g46390
Os.10148.1.S1_at--296--8291Chr04:27290792..27290816 (25 bp)
GGCTTTCTTGGCCTTCATAAGATAT
LOC_Os04g46390
Target Sequence 
TAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGGTCAACACAAGGCCATAAATGATGAGGGAATGC
CACACCATGGCCGGCCTTTCATGAAGGGCCGTCTCTTTGTGGAATTCAATGTTGAGTTCCCTGAATCTGGTGTACTCTCC
CGTGACCAATGCCGGGCACTTGAGATGATCCTACCACCTAAACCTGGGCACCAATTATCAGATATGGACCTGGATCAATG
TGAGGAAACTACCATGCATGATGTGAACATAGAAGAGGAGATGAGGCGCAAGCAGTATCAAAGGAAGCAGGAAGCGTACG
ACGAAGATGAGGAGGAGGATGCTCCAAGAGTACAGTGTGCTCAACAGTAAGAAGTGTCACTTTCTGGCGCAAGTGATGAT
ACTCCATGTAAACTAAGTAGTTTTTGGTGAGACTGTTCATTTTAGTGTATTTTGTACTAGTTAAATTAAATAGTGAATGT
CTAAGTTGTGTCGTTTGATATATAAGCTTGTGCTAACAACATAAGGCTTTCTTGGCCTTCATAAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis