Browse Element(s) Details


OsAffx.14299.2.S1_at

Description tigr:9632.m04471
TID=OsAffx.14299.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to apetala2 domain TINY like protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4641011/11AP2 domain containing protein, expressed
LOC_Os08g337401/11Glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46380Os.57184.1.S1_at11/114+27279015..27279649expressed protein
LOC_Os04g46390Os.10148.1.S1_at11/114+27286392..27290953DnaJ protein homolog, putative, expressed
LOC_Os04g46400Os.54929.1.S1_at11/114+27298110..27299245AP2 domain containing protein, expressed
LOC_Os04g46410OsAffx.14299.2.S1_at11/114+27304305..27305048AP2 domain containing protein, expressed
LOC_Os04g46420OsAffx.26484.1.S1_at10/114+27306715..27306997hypothetical protein
LOC_Os04g46430OsAffx.26637.1.S1_x_at4/114+27310208..27311194hypothetical protein
LOC_Os04g46430OsAffx.26637.2.S1_x_at2/114+27310208..27311194hypothetical protein
LOC_Os04g46440Os.55643.1.S1_at11/114+27320783..27321770DRE binding factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14299.2.S1_at--311--1631Chr04:27304459..27304483 (25 bp)
AGCGGCCGCGCAGTGATCACCTGAA
LOC_Os04g46410
OsAffx.14299.2.S1_at--1103--7391Chr04:27304471..27304495 (25 bp)
GTGATCACCTGAAGCACCCGACATA
LOC_Os04g46410
OsAffx.14299.2.S1_at--1015--3911Chr04:27304840..27304864 (25 bp)
CGGCGCCGGTTTGCATCGTTGAGAA
LOC_Os04g46410
OsAffx.14299.2.S1_at--1046--8811Chr04:27304859..27304883 (25 bp)
TGAGAACGGGACACTGCAGCAGGAC
LOC_Os04g46410
OsAffx.14299.2.S1_at--583--8111Chr04:27304880..27304904 (25 bp)
GGACGGCGGCACTGGACTAGACTAC
LOC_Os04g46410
OsAffx.14299.2.S1_at--1087--10011Chr04:27304897..27304921 (25 bp)
TAGACTACACGTATTTCACCATGCC
LOC_Os04g46410
OsAffx.14299.2.S1_at--111--6891Chr04:27304907..27304931 (25 bp)
GTATTTCACCATGCCAGATGCTCTT
LOC_Os04g46410
OsAffx.14299.2.S1_at--478--1291Chr04:27304922..27304946 (25 bp)
AGATGCTCTTCTAGAGTTCGGGTTC
LOC_Os04g46410
OsAffx.14299.2.S1_at--251--4151Chr04:27304966..27304990 (25 bp)
CGCCGTATTATTGCGGTTCGCCGTG
LOC_Os04g46410
OsAffx.14299.2.S1_at--544--10631Chr04:27304982..27305006 (25 bp)
TTCGCCGTGGGATGACGATGCTGAC
LOC_Os04g46410
OsAffx.14299.2.S1_at--1063--8933Chr11:5248597..5248642 (24 bp)
TGACGATGCTGACGATTTCTTCTTT
NONE
Target Sequence 
AGCGGCCGCGCAGTGATCACCTGAAGCACCCGACATACCGCGGCGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTCGGAG
ATCCGGGAGCCCCGGAAGAAGTCGCGCATCTGGCTCGGCACGTTCGACACCGCCGAGATGGCCGCGCGCGCGCACGACGT
CGCGGCGCTCGCCATCAAGGGCCGCACCGTGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCCCGCGCGCCGCCTCGG
CCTCGCCCAAGGATGTCCAGGCCGCCGCCGCGCTCGCCGCGGCCACGGCTTCGCCCGCGCCCGCGCTCTCGCCCACGCCA
TGCCACGACGTCGACGCCGCTGCCGATGACGAGCCCGAGCCGGCGGAGCCTGAGCAGGCGACGGCGCCGGTTTGCATCGT
TGAGAACGGGACACTGCAGCAGGACGGCGGCACTGGACTAGACTACACGTATTTCACCATGCCAGATGCTCTTCTAGAGT
TCGGGTTCACGTTGCCGCCGCCACCGCCGCCGTATTATTGCGGTTCGCCGTGGGATGACGATGCTGACGATTTCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14299.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis