Browse Element(s) Details


Os.10221.1.S1_at

Description gb:AK061159.1
DB_XREF= gi:32971177
TID=Os.10221.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0063G05.19 (OSJNBb0063G05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H06, full insert sequence.
FL= gb:AK101664.1 gb:AK061159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4777011/11Nuclear movement protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47740Os.12075.1.S1_a_at11/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47740Os.12075.1.S2_a_at10/111+27629959..27639153Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g47750NANA1+27644206..27648558Splicing factor U2AF 23 kDa subunit, putative, expressed
LOC_Os01g47760Os.11657.1.S1_at11/111+27652898..27653873glutaredoxin family protein, putative, expressed
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed
LOC_Os01g47780Os.5908.1.S1_at11/111+27667758..27668798Fasciclin domain containing protein, expressed
LOC_Os01g47790Os.35344.3.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790Os.35344.18.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_at7/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_x_at5/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47800Os.32955.2.S1_x_at11/111+27684185..27690000expressed protein
LOC_Os01g47800Os.32955.1.A1_at11/111+27684185..27690000expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10221.1.S1_at--296--5731Chr01:27664562..27664586 (25 bp)
GACTGATTCATCATTCTGGACAATA
LOC_Os01g47770
Os.10221.1.S1_at--833--4891Chr01:27665235..27665259 (25 bp)
GCTTAGATCCATATGCTGCAGACCA
LOC_Os01g47770
Os.10221.1.S1_at--749--1471Chr01:27665780..27665804 (25 bp)
AGAATCCAGGATTCGACTTCTCCCA
LOC_Os01g47770
Os.10221.1.S1_at--409--3511Chr01:27665844..27665868 (25 bp)
CATGGGTGGAATTCGCTCTGACTGA
LOC_Os01g47770
Os.10221.1.S1_at--420--8411Chr01:27665874..27665898 (25 bp)
GGCCCAACGTCATGTATCTGGCTAA
LOC_Os01g47770
Os.10221.1.S1_at--320--6291Chr01:27665901..27665925 (25 bp)
GATGTTGCTAACCTCACAGTGGCTT
LOC_Os01g47770
Os.10221.1.S1_at--446--8671Chr01:27665940..27665964 (25 bp)
TGTGGTGGCTGTACATATCTCGCAT
LOC_Os01g47770
Os.10221.1.S1_at--473--5591Chr01:27665976..27666000 (25 bp)
GAAATTCGCCGGTTTCCTATGGCTG
LOC_Os01g47770
Os.10221.1.S1_at--259--10111Chr01:27665993..27666017 (25 bp)
TATGGCTGCCTTTGTGCCTTAGAAA
LOC_Os01g47770
Os.10221.1.S1_at--40--371Chr01:27666038..27666062 (25 bp)
ATCAATCGCCGAGCCAGACGTAGGA
LOC_Os01g47770
Os.10221.1.S1_at--236--2451Chr01:27666151..27666175 (25 bp)
AAAATATACCATCTACCCATGCCGG
LOC_Os01g47770
Target Sequence 
GACTGATTCATCATTCTGGACAATAGAGGATGGTGAAATGCACATCACACTGCAAAAAAAGAGAGAAGGGGAAAACATGG
TCATCTCCAATACAAGGCCAAGGTAGCTTAGATCCATATGCTGCAGACCAAGAACAAAAACGGCTTATGCTGCAAAGGTT
TCAAGAAGAGAATCCAGGATTCGACTTCTCCCAGGCTCAGTTCACCGGAACCTGCCCTGACCCAAGAACCTTCATGGGTG
GAATTCGCTCTGACTGAAGCTTGGCCCAACGTCATGTATCTGGCTAAATGATGTTGCTAACCTCACAGTGGCTTGTCAAA
TAATCAAATGTGGTGGCTGTACATATCTCGCATCTGTAAATTGTGAAATTCGCCGGTTTCCTATGGCTGCCTTTGTGCCT
TAGAAATAATGGTGAATGTTTGGCCTATCAATCGCCGAGCCAGACGTAGGATTCTGAAGTTATTTATTCACTTATTGATC
TAGCATCCTTGATGATGTAGTAAGTTTGTGATCACCAGGTACTTGTGACTGTTCGAATGAAAATATACCATCTACCCATG
CCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis