Browse Element(s) Details


Os.10283.1.S1_at

Description gb:AK070814.1
DB_XREF= gi:32980837
TID=Os.10283.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072A16, full insert sequence.
FL= gb:AK104417.1 gb:AK070814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01220OsAffx.19542.3.S1_x_at5/114+155325..160215retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01230Os.7215.1.S1_at11/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01230OsAffx.25820.1.S1_s_at9/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01240Os.10283.1.S1_at11/114+173052..176937expressed protein
LOC_Os04g01250Os.9707.1.S1_at10/114+178337..187650Amidase family protein, expressed
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01270NANA4+198241..199027hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10283.1.S1_at--184--8131Chr04:176129..176153 (25 bp)
GGAACCCTCCTTGTTAGAAAGCTCG
LOC_Os04g01240
Os.10283.1.S1_at--55--5571Chr04:176113..176137 (25 bp)
GAAAGCTCGTCAATTTGTCTCCAAC
LOC_Os04g01240
Os.10283.1.S1_at--926--9391Chr04:173913..173937 (25 bp)
TCGTTCGACGATTGGCTGCCCTAGA
LOC_Os04g01240
Os.10283.1.S1_at--585--991Chr04:173859..173883 (25 bp)
AGGATGAGCCGTTTGTACTTGACAA
LOC_Os04g01240
Os.10283.1.S1_at--861--6451Chr04:173833..173857 (25 bp)
GATCAATGCTGGGTTCTGGCAGACA
LOC_Os04g01240
Os.10283.1.S1_at--571--7951Chr04:173472..173496 (25 bp)
GGATAGCCGCTTGTTTGGACCAGTC
LOC_Os04g01240
Os.10283.1.S1_at--439--1131Chr04:173451..173475 (25 bp)
AGTCCCTATGACTGATATCCTTGGC
LOC_Os04g01240
Os.10283.1.S1_at--273--10251Chr04:173412..173436 (25 bp)
TTTAAGAACGGCTGTCGACCATGGC
LOC_Os04g01240
Os.10283.1.S1_at--980--1711Chr04:173263..173287 (25 bp)
ACCAGGATTCACCAGTTCTGGCAGT
LOC_Os04g01240
Os.10283.1.S1_at--719--4891Chr04:173186..173210 (25 bp)
GCTTTTGACGTGCTGTGGTGTAACT
LOC_Os04g01240
Os.10283.1.S1_at--574--7491Chr04:173172..173196 (25 bp)
GTGGTGTAACTTTTCCCTTCGATGG
LOC_Os04g01240
Target Sequence 
GGAACCCTCCTTGTTAGAAAGCTCGTCAATTTGTCTCCAACACAAGTCTTTGTTGGTGANTGTTGTCTTACTAAAAGACC
CAGAGAAATCTGATGATTTAATCGTTCGACGATTGGCTGCCCTAGAAGGTTATGAGATGGTCTCTAATGATGAGAAGGAT
GAGCCGTTTGTACTTGACAAGGATCAATGCTGGGTTCTGGCAGACAACCAATCACTAAAGCCAAAGGAAGCTAGGGATAG
CCGCTTGTTTGGACCAGTCCCTATGACTGATATCCTTGGCAGAGTGATATACTCTTTAAGAACGGCTGTCGACCATGGCC
CAGTGGAGAACAGCCGAATGGCCATGAACCAGGATTCACCAGTTCTGGCAGTAGAGCTTGATGTGGAAGAGATGGCGAAG
AATAATAAAGTGTAGATAATTAGNGCTTTTGACGTGCTGTGGTGTAACTTTTCCCTTCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis