Browse Element(s) Details


Os.7215.1.S1_at

Description gb:CR292872
DB_XREF= gi:44679438
DB_XREF=CR292872
CLONE=y819d10p3
TID=Os.7215.1
CNT=25
FEA=EST
TIER=Stack
STK=11
UG=Os.7215 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176124.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0123011/11phosphoglycerate mutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01220OsAffx.19542.3.S1_x_at5/114+155325..160215retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01230Os.7215.1.S1_at11/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01230OsAffx.25820.1.S1_s_at9/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01240Os.10283.1.S1_at11/114+173052..176937expressed protein
LOC_Os04g01250Os.9707.1.S1_at10/114+178337..187650Amidase family protein, expressed
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7215.1.S1_at--168--6351Chr04:172422..172446 (25 bp)
GATGCTGCACCTTGAGCAAATTCAA
LOC_Os04g01230
Os.7215.1.S1_at--1157--2751Chr04:172445..172469 (25 bp)
AAGACCTGTGTTAGAGATTGTTACC
LOC_Os04g01230
Os.7215.1.S1_at--957--6591Chr04:172460..172484 (25 bp)
GATTGTTACCGTGCATTGGTGCCTT
LOC_Os04g01230
Os.7215.1.S1_at--49--8611Chr04:172476..172500 (25 bp)
TGGTGCCTTGATTATTTTTCCCAGC
LOC_Os04g01230
Os.7215.1.S1_at--1108--10351Chr04:172490..172514 (25 bp)
TTTTTCCCAGCCCATTGACACTATT
LOC_Os04g01230
Os.7215.1.S1_at--70--8971Chr04:172505..172529 (25 bp)
TGACACTATTCAAGCTAGCACTGGA
LOC_Os04g01230
Os.7215.1.S1_at--540--5211Chr04:172546..172570 (25 bp)
GAATTCAAACAGCATCTACAGATAG
LOC_Os04g01230
Os.7215.1.S1_at--39--10031Chr04:172568..172592 (25 bp)
TAGAACTTACCATTTGTTGCCCAAA
LOC_Os04g01230
Os.7215.1.S1_at--225--6691Chr04:172583..172607 (25 bp)
GTTGCCCAAAAGTATGATCACGATT
LOC_Os04g01230
Os.7215.1.S1_at--1065--10091Chr04:172672..172696 (25 bp)
TATGTCGTATCTCAACACGTACTGA
LOC_Os04g01230
Os.7215.1.S1_at--435--3271Chr04:172684..172708 (25 bp)
CAACACGTACTGAACTTGACTGTAA
LOC_Os04g01230
Target Sequence 
GATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCC
CATTGACACTATTCAAGCTAGCACTGGAAGTCNGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATT
TGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTA
CAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis