Browse Element(s) Details


OsAffx.25820.1.S1_s_at

Description tigr:9632.m00024
TID=OsAffx.25820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoglycerate mutase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g012309/11phosphoglycerate mutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01220OsAffx.19542.3.S1_x_at5/114+155325..160215retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g01230Os.7215.1.S1_at11/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01230OsAffx.25820.1.S1_s_at9/114+167875..172785phosphoglycerate mutase, putative, expressed
LOC_Os04g01240Os.10283.1.S1_at11/114+173052..176937expressed protein
LOC_Os04g01250Os.9707.1.S1_at10/114+178337..187650Amidase family protein, expressed
LOC_Os04g01260NANA4+193734..195090retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25820.1.S1_s_at--1--5151Chr04:168469..168597 (25 bp)
GCAAAACCATCTACCTGGTCAGGCA
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--902--8271Chr04:168594..168618 (25 bp)
GGCATGCCCAGGGTGTTCACAATGT
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--882--9851Chr04:168644..168668 (25 bp)
TACATGTCGCCCCAACTCTTTGACG
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--313--4311Chr04:168673..168697 (25 bp)
CCTTACTCCATTGGGCTGGAACCAA
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--1135--8171NONE
GGAACCAAGTTGACTGCCTGCGTGA
NONE
OsAffx.25820.1.S1_s_at--8--5731Chr04:169665..169689 (25 bp)
GACTGCCTGCGTGAGCACGTGAAAA
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--54--8591Chr04:169717..169741 (25 bp)
TGGTTATTACTTCCCCTCTACTGAG
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--523--9531NONE
TCTACTGAGGACTATGCAAACTGCA
NONE
OsAffx.25820.1.S1_s_at--637--2151Chr04:171830..171854 (25 bp)
ACAGCAGGGAGTGTCATCCAACCAT
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--128--10691Chr04:172206..172230 (25 bp)
TTGCCAACTGTGAGCTCCGGTCGAT
LOC_Os04g01230
OsAffx.25820.1.S1_s_at--1061--7731Chr04:172231..172358 (25 bp)
GGTGTTGGTCGATACAAGCATGCTT
LOC_Os04g01230
Target Sequence 
GCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCG
CCCCAACTCTTTGACGCCCACCTTACTCCATTGGGCTGGAACCAAGTTGACTGCCTGCGTGAGCACGTGAAAAAAAGTGG
ACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTG
AAAACTCTGTTGATGGAATAGAGAATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCA
GCTAGGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTT
ATATCACACCTTAAGCATGTACAGCAGGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTG
AGCTCCGGTCGATGGTGTTGGTCGATACAAGCATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25820.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis