Browse Element(s) Details


Os.10299.1.S1_at

Description gb:AK071503.1
DB_XREF= gi:32981526
TID=Os.10299.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091N08, full insert sequence.
FL= gb:AK071503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3014011/11Pre-mRNA splicing factor SF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30090OsAffx.20387.1.S1_x_at1/115+17328349..17341265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30090OsAffx.19678.3.A1_at1/115+17328349..17341265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30090Os.8747.3.S1_x_at1/115+17328349..17341265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30100NANA5+17342136..17345108hypothetical protein
LOC_Os05g30110NANA5+17347064..17347501retrotransposon protein, putative, unclassified
LOC_Os05g30120NANA5+17355450..17355995transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30130Os.54342.1.S1_at11/115+17360770..17364936DnaJ domain containing protein, expressed
LOC_Os05g30140Os.10299.1.S1_at11/115+17365153..17372246Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os05g30150OsAffx.27081.2.S1_at11/115+17384645..17387319amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0006376biological_processmRNA splice site selection
GO:0048024biological_processregulation of nuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10299.1.S1_at--641--551Chr05:17371665..17371780 (25 bp)
ATCCCCATCTCCTGTGAAATCTGAG
LOC_Os05g30140
Os.10299.1.S1_at--304--7991Chr05:17371788..17371812 (25 bp)
GGATGCACTTGAAGCCTGCCAGAAA
LOC_Os05g30140
Os.10299.1.S1_at--49--6831Chr05:17371867..17371891 (25 bp)
GTTTATCTGTTTCTGCGTTACCATT
LOC_Os05g30140
Os.10299.1.S1_at--181--5371Chr05:17371906..17371930 (25 bp)
GAAGAGAGCCGTGTTATTTCACTGT
LOC_Os05g30140
Os.10299.1.S1_at--67--191Chr05:17371921..17371945 (25 bp)
ATTTCACTGTTGCTTGGTCATGTCG
LOC_Os05g30140
Os.10299.1.S1_at--797--7811Chr05:17371936..17371960 (25 bp)
GGTCATGTCGTAATATCTGTCAGAA
LOC_Os05g30140
Os.10299.1.S1_at--1022--2391Chr05:17371959..17371983 (25 bp)
AAACATTGCCTTACATGCTTAGCGT
LOC_Os05g30140
Os.10299.1.S1_at--658--9071Chr05:17371974..17371998 (25 bp)
TGCTTAGCGTTTTACTTGCCATCAC
LOC_Os05g30140
Os.10299.1.S1_at--593--391Chr05:17371994..17372018 (25 bp)
ATCACCAATCTATCAGACCTCGTAG
LOC_Os05g30140
Os.10299.1.S1_at--922--391Chr05:17372005..17372029 (25 bp)
ATCAGACCTCGTAGCACATGGTGCT
LOC_Os05g30140
Os.10299.1.S1_at--802--811Chr05:17372022..17372046 (25 bp)
ATGGTGCTCGAACTTCATGCTATAC
LOC_Os05g30140
Target Sequence 
ATCCCCATCTCCTGTGAAATCTGAGTGAAGATGGATGCACTTGAAGCCTGCCAGAAACTATTTCATGATTTGTGGAGCTG
AGTTTCGGAAGGCAGTAGATTGTGGATTATGGTTTATCTGTTTCTGCGTTACCATTGTTGNTTACTTTTCAGAAGAGAGC
CGTGTTATTTCACTGTTGCTTGGTCATGTCGTAATATCTGTCAGAAACATTGCCTTACATGCTTAGCGTTTTACTTGCCA
TCACCAATCTATCAGACCTCGTAGCACATGGTGCTCGAACTTCATGCTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis