Browse Element(s) Details


Os.54342.1.S1_at

Description gb:AK103527.1
DB_XREF= gi:32988736
TID=Os.54342.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131M19, full insert sequence.
FL= gb:AK103527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3013011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30090OsAffx.20387.1.S1_x_at1/115+17328349..17341265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30090OsAffx.19678.3.A1_at1/115+17328349..17341265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30090Os.8747.3.S1_x_at1/115+17328349..17341265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30100NANA5+17342136..17345108hypothetical protein
LOC_Os05g30110NANA5+17347064..17347501retrotransposon protein, putative, unclassified
LOC_Os05g30120NANA5+17355450..17355995transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g30130Os.54342.1.S1_at11/115+17360770..17364936DnaJ domain containing protein, expressed
LOC_Os05g30140Os.10299.1.S1_at11/115+17365153..17372246Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os05g30150OsAffx.27081.2.S1_at11/115+17384645..17387319amino acid transporter family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54342.1.S1_at--878--3131Chr05:17362148..17362172 (25 bp)
AATTCGACCAGCAGTTTCCACGAGG
LOC_Os05g30130
Os.54342.1.S1_at--873--9671Chr05:17362006..17362030 (25 bp)
TCACTGTGACAAACTGCGGAGCCTT
LOC_Os05g30130
Os.54342.1.S1_at--330--4691Chr05:17361991..17362015 (25 bp)
GCGGAGCCTTTCTGTAGCATAAATG
LOC_Os05g30130
Os.54342.1.S1_at--1129--4951Chr05:17361975..17361999 (25 bp)
GCATAAATGGTTTGGCCTCTTCTTT
LOC_Os05g30130
Os.54342.1.S1_at--168--6851Chr05:17361939..17361961 (23 bp)
GTTTCGCTCTTCCTTTGCAGGTATA
LOC_Os05g30130
Os.54342.1.S1_at--906--5011Chr05:17361084..17361108 (25 bp)
GCAGGTATATCACGGCACAGGTTTT
LOC_Os05g30130
Os.54342.1.S1_at--74--1511Chr05:17361045..17361069 (25 bp)
AGCAGCGTGGTTTCTTGGTCTATGA
LOC_Os05g30130
Os.54342.1.S1_at--331--4991Chr05:17360964..17360988 (25 bp)
GCATGCAGTCATGAACCATCAGGTT
LOC_Os05g30130
Os.54342.1.S1_at--614--51Chr05:17360917..17360941 (25 bp)
ATTGATGTCAACCTTGAGCGGCATG
LOC_Os05g30130
Os.54342.1.S1_at--836--2571Chr05:17360879..17360903 (25 bp)
AACGGGCCGGTTACTTTTGCTGCAG
LOC_Os05g30130
Os.54342.1.S1_at--479--7071Chr05:17360855..17360879 (25 bp)
GTAATCATTTCACACTTGCTTCCAG
LOC_Os05g30130
Target Sequence 
AATTCGACCAGCAGTTTCCACGAGGAAGTTCTTCTAGAGATAATCTTGAGCAGTATGTTTTTAAAGACTACAAGAGCATG
CTGGGAAGATTCTGTCATGTGGAACTCCAAAGGCGCCAATGGGCCAAGGACTACCCTACACCTCACTGTGACAAACTGCG
GAGCCTTTCTGTAGCATAAATGGTTTGGCCTCTTCTTTTGTTAGTAGAAGAGTTTCGCTCTTCCTTTGCAGGTATATCAC
GGCACAGGTTTTTTGGGGAAATGATGAGCAGCGTGGTTTCTTGGTCTATGATTTTAAATACTTAGGAAGTAGTAGATACT
ATTGCTGCATTTTAGTTATGAACACATGCATGCAGTCATGAACCATCAGGTTAACTCACAGATCTCTGTTTACTATTGAT
GTCAACCTTGAGCGGCATGGAGTTCATATTGAAACGGGCCGGTTACTTTTGCTGCAGTAATCATTTCACACTTGCTTCCA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis