Browse Element(s) Details


Os.10303.1.S2_at

Description gb:AK102555.1
DB_XREF= gi:32987764
TID=Os.10303.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097F14, full insert sequence.
FL= gb:AK103900.1 gb:AK102555.1 gb:AK060917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0135011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01340OsAffx.29729.1.S1_at1/113+238751..240393transposon protein, putative, unclassified
LOC_Os03g01350Os.10303.1.S2_at11/113+242972..244443hypothetical protein
LOC_Os03g01350Os.10303.1.S3_at7/113+242972..244443hypothetical protein
LOC_Os03g01360Os.9117.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01360OsAffx.24932.2.S1_x_at11/113+245979..255782expressed protein
LOC_Os03g01360Os.55376.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01380NANA3+259910..262240retrotransposon protein, putative, unclassified
LOC_Os03g01390OsAffx.828.1.S1_x_at1/113+263280..265145transposon protein, putative, unclassified
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10303.1.S2_at--485--10451Chr03:243097..243121 (25 bp)
TTAGTCTTCTTCTGCGTCTACATTT
LOC_Os03g01350
Os.10303.1.S2_at--753--291Chr03:243137..243161 (25 bp)
ATAGAGTCTGCTGCTTCATGGGTTT
LOC_Os03g01350
Os.10303.1.S2_at--45--10791Chr03:243161..243185 (25 bp)
TTGATGTCACTTTTGCTTGCCAAAT
LOC_Os03g01350
Os.10303.1.S2_at--19--4931Chr03:243175..243199 (25 bp)
GCTTGCCAAATTCTTTCTACTCATG
LOC_Os03g01350
Os.10303.1.S2_at--386--5191Chr03:243217..243241 (25 bp)
GCAATGACAGCTCTGCTAGTGCAAA
LOC_Os03g01350
Os.10303.1.S2_at--707--10691Chr03:243283..243307 (25 bp)
TTGCCTAGTAGCTAGTGTGGCTCCT
LOC_Os03g01350
Os.10303.1.S2_at--435--9811Chr03:243350..243374 (25 bp)
TAACTCTATACTCTGACGGTGCAAT
LOC_Os03g01350
Os.10303.1.S2_at--236--10251Chr03:243406..243430 (25 bp)
TTTGGATTGAGCCTGTGACCTGTTT
LOC_Os03g01350
Os.10303.1.S2_at--991--7611Chr03:243467..243491 (25 bp)
GGGACACTTCAATCTTTGTGGCTGA
LOC_Os03g01350
Os.10303.1.S2_at--908--8651Chr03:243483..243507 (25 bp)
TGTGGCTGATTTCTTGTTTCTCAAG
LOC_Os03g01350
Os.10303.1.S2_at--402--2031Chr03:243540..243564 (25 bp)
ACTAGCACAGGCCATTTCCAGTGTA
LOC_Os03g01350
Target Sequence 
TTAGTCTTCTTCTGCGTCTACATTTGCTTGTAGCAGTATAATAGAGTCTGCTGCTTCATGGGTTTTGATGTCACTTTTGC
TTGCCAAATTCTTTCTACTCATGTTTAGAGTTAGGGTAGAGCAATGACAGCTCTGCTAGTGCAAACAACAATGTGGCCAG
TACTGTATCTGTATACAGTACAAGTTTTGCCTAGTAGCTAGTGTGGCTCCTNCTGACTGCATCTAATTTGATTTCTTTCC
CCATTTGTAATTTTAACTCTATACTCTGACGGTGCAATATGGCGTCAATTGAAACAATTTTTACTAGTTTTTGGATTGAG
CCTGTGACCTGTTTGGATGTTTTCTTTATTTTGAACTGTTTTGCAGATATGGGACACTTCAATCTTTGTGGCTGATTTCT
TGTTTCTCAAGATTGTACATCCATGAGACAATTGAATCCCTAGACTAGCACAGGCCATTTCCAGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10303.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis