Browse Element(s) Details


OsAffx.24932.2.S1_x_at

Description tigr:9631.m00040
TID=OsAffx.24932.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0136011/11expressed protein
LOC_Os10g286101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01340OsAffx.29729.1.S1_at1/113+238751..240393transposon protein, putative, unclassified
LOC_Os03g01350Os.10303.1.S2_at11/113+242972..244443hypothetical protein
LOC_Os03g01350Os.10303.1.S3_at7/113+242972..244443hypothetical protein
LOC_Os03g01360Os.9117.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01360OsAffx.24932.2.S1_x_at11/113+245979..255782expressed protein
LOC_Os03g01360Os.55376.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01380NANA3+259910..262240retrotransposon protein, putative, unclassified
LOC_Os03g01390OsAffx.828.1.S1_x_at1/113+263280..265145transposon protein, putative, unclassified
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified
LOC_Os03g01410NANA3+272015..273263Leucine Rich Repeat family protein
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24932.2.S1_x_at--241--8853Chr10:14581441..14581465 (25 bp)
TGATCATACCTTTCTGCCAATGCAC
NONE
OsAffx.24932.2.S1_x_at--307--9012Chr10:14581461..14581485 (25 bp)
TGCACGGTAAGCTCGGTAGAACTCC
NONE
OsAffx.24932.2.S1_x_at--277--1592Chr10:14581501..14581525 (25 bp)
AGCTCTGGGCGTTTCTTGTAGTACA
NONE
OsAffx.24932.2.S1_x_at--893--3771Chr03:252644..252668 (25 bp)
CTCTGCTCTCCGTGCAAAAGAATCA
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--511--6431Chr03:252689..252713 (25 bp)
GATCATAGCTTTCACCTTTGAGTCC
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--452--4311Chr03:252703..252727 (25 bp)
CCTTTGAGTCCATATCTGTTGCATA
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--1027--7411Chr03:252777..252801 (25 bp)
GTGTTGCTTTCGTGGCACCAATGGC
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--124--2971Chr03:252796..252820 (25 bp)
AATGGCGGCCTTGGTTGGTCATGAC
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--102--7892Chr03:252844..252868 (25 bp)
GGTTAGTCATATCAGCCCCAAGAAC
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--1146--7691Chr03:252900..252924 (25 bp)
GGGTCTTTTTCTGTGTTTAGCTCAT
LOC_Os03g01360
OsAffx.24932.2.S1_x_at--521--7471Chr03:253071..253095 (25 bp)
GTGTGCATGCAAGCCAGTTATTCAT
LOC_Os03g01360
Target Sequence 
TGATCATACCTTTCTGCCAATGCACGGTAAGCTCGGTAGAACTCCTCCACCAGTTTCATTAGCTCTGGGCGTTTCTTGTA
GTACATCTCTGCTCTCCGTGCAAAAGAATCAGCATCTTCATTGAGAAGTTTGATCATAGCTTTCACCTTTGAGTCCATAT
CTGTTGCATAATTCAAGTGCTGAGGAAGTGAGGTCTTAATTATTGTTTGGAGTTGGTCCGTGTTGCTTTCGTGGCACCAA
TGGCGGCCTTGGTTGGTCATGACGCGAGGCAGTATTCGTGGTGGTGGGTTAGTCATATCAGCCCCAAGAACTCCAAATGG
CTCCAAGAAAATCTCAATGGTGGGGTCTTTTTCTGTGTTTAGCTCATATTCTCATGTTTATTCATTGCTTTGAGGTTTGA
GCATATATCATGAAATTGCCATTAGTGTTGCACTAGATATTTACTGGCCAAAGAAGCAGCGATATGCTTTTTTTTGATTG
TTTCAATGTAGCAGTATATTTTCAAGGCACATGGTGTGCATGCAAGCCAGTTATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24932.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis