Browse Element(s) Details


Os.10303.1.S3_at

Description gb:CB673482
DB_XREF= gi:29677207
DB_XREF=OSJNEe08A10.r
CLONE=OSJNEe08A10
TID=Os.10303.1
CNT=22
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.10303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150K03, full insert sequence
FL= gb:AK103900.1 gb:AK102555.1 gb:AK060917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g013507/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01340OsAffx.29729.1.S1_at1/113+238751..240393transposon protein, putative, unclassified
LOC_Os03g01350Os.10303.1.S2_at11/113+242972..244443hypothetical protein
LOC_Os03g01350Os.10303.1.S3_at7/113+242972..244443hypothetical protein
LOC_Os03g01360Os.9117.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01360OsAffx.24932.2.S1_x_at11/113+245979..255782expressed protein
LOC_Os03g01360Os.55376.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01380NANA3+259910..262240retrotransposon protein, putative, unclassified
LOC_Os03g01390OsAffx.828.1.S1_x_at1/113+263280..265145transposon protein, putative, unclassified
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10303.1.S3_at--259--7051Chr03:243940..243964 (25 bp)
GTAACACATGGCTAACTATCTAACT
LOC_Os03g01350
Os.10303.1.S3_at--450--9591Chr03:243970..243994 (25 bp)
TCATACTCATGTCAATTCGTCCTTC
LOC_Os03g01350
Os.10303.1.S3_at--337--111Chr03:243984..244008 (25 bp)
ATTCGTCCTTCATTATTGCTTGCAA
LOC_Os03g01350
Os.10303.1.S3_at--263--6391Chr03:244014..244038 (25 bp)
GATCTTAATTGGCTCAACCAGGAGT
LOC_Os03g01350
Os.10303.1.S3_at--572--971Chr03:244033..244057 (25 bp)
AGGAGTTGGTTCTCTAATTTGCTCT
LOC_Os03g01350
Os.10303.1.S3_at--631--6511Chr03:244107..244131 (25 bp)
GATATATCTGCATTTTTCTTCATTG
LOC_Os03g01350
Os.10303.1.S3_at--284--5211NONE
GAATTCCCGTGTTTTGATTGCAGCC
NONE
Os.10303.1.S3_at--457--5071Chr03:244205..244229 (25 bp)
GCAGCCTTTGGTGTTGTACTTCATG
LOC_Os03g01350
Os.10303.1.S3_at--663--1731NONE
ACCATGCCTCCCTTATTACAGAGAA
NONE
Os.10303.1.S3_at--742--8991Chr03:244459..244483 (25 bp)
TGAAGCATTTTCTAACTGTGGGCAA
NONE
Os.10303.1.S3_at--10--10131Chr03:244490..244514 (25 bp)
TATGTACTCTTTTCTATCTGTGGAC
NONE
Target Sequence 
GTAACACATGGCTAACTATCTAACTAATAATCATACTCATGTCAATTCGTCCTTCATTATTGCTTGCAACATTTGATCTT
AATTGGCTCAACCAGGAGTTGGTTCTCTAATTTGCTCTNCCGAATTTTGTTAGAATGGCACCAATAATCAGATATGTTTA
GGCTATTGATATATCTGCATTTTTCTTCATTGAGAATGGTAAGTTTTTTTGTGCAAATATTAGCTTCTGATTTATTAGTT
TTGTTAGAATTCCCGTGTTTTGATTGCAGCCTTTGGTGTTGTACTTCATGGTTAACTAACCATGCCTCCCTTATTACAGA
GAAGGTAAGGATTCAACCAGGGAACGAGGGAGGTGGGAGGCCAGGTACAATGGGCTATTAGGGAGGATAGTGCAAAGGAT
CATCACGTGACTGAACAAAAAAAACTTGCTGAAGCATTTTCTAACTGTGGGCAAGCAAGATATGTACTCTTTTCTATCTG
TGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10303.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis