Browse Element(s) Details


Os.10328.1.S1_at

Description gb:AK063380.1
DB_XREF= gi:32973398
TID=Os.10328.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F11, full insert sequence.
FL= gb:AK063380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5561010/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55590Os.25453.1.A1_at11/113+31582727..31585102myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g55610Os.10328.1.S1_at10/113+31601273..31602898Dof domain, zinc finger family protein, expressed
LOC_Os03g55620Os.12658.1.S1_at11/113+31613534..31617659Serine/threonine-protein kinase 12, putative, expressed
LOC_Os03g55630Os.51409.1.S1_at11/113+31619883..31620695expressed protein
LOC_Os03g55640Os.17562.1.S1_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55640Os.17562.2.S1_x_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55650OsAffx.25722.1.S1_at11/113+31627180..31627632hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10328.1.S1_at--131--2371Chr03:31601768..31601792 (25 bp)
AACACGGTCGGGATGGACCTGCCAC
LOC_Os03g55610
Os.10328.1.S1_at--941--4151Chr03:31601730..31601754 (25 bp)
CGCGCCGGAGATGCAGTACTGGAAT
LOC_Os03g55610
Os.10328.1.S1_at--955--4371Chr03:31601662..31601686 (25 bp)
CCAACGGCGCGTTCCCATGAGATAG
LOC_Os03g55610
Os.10328.1.S1_at--209--5791Chr03:31601629..31601653 (25 bp)
GACGACGTCGTCTCATGCAAGCATG
LOC_Os03g55610
Os.10328.1.S1_at--1121--4851Chr03:31601595..31601619 (25 bp)
GCTAGTGTAGCTCTCGATCGGTTTA
LOC_Os03g55610
Os.10328.1.S1_at--475--4891Chr03:31601570..31601594 (25 bp)
GCTTTAATCATCATCGATCTTGTGT
LOC_Os03g55610
Os.10328.1.S1_at--1127--6411Chr03:31601555..31601579 (25 bp)
GATCTTGTGTGGTTTCGGTTAATCA
LOC_Os03g55610
Os.10328.1.S1_at--413--791Chr03:31601345..31601369 (25 bp)
ATGTGTACGTGTGTTGTCGGTTTCG
LOC_Os03g55610
Os.10328.1.S1_at--247--7191Chr03:31601330..31601354 (25 bp)
GTCGGTTTCGTTCAGGTTGATCCAT
LOC_Os03g55610
Os.10328.1.S1_at--487--9771Chr03:31601296..31601320 (25 bp)
TAAGGTTTACATTCCCTGCAAGCTC
LOC_Os03g55610
Os.10328.1.S1_at--991--9411Chr03:31601273..31601297 (25 bp)
TCGTGGACGTACTTATCTCAGCTGC
NONE
Target Sequence 
AACACGGTCGGGATGGACCTGCCACCCGTGTCGCTCGCCGCGCCGGAGATGCAGTACTGGAATGGCCCGGCGGCGATGTC
GGTGCCGTGGCCGGACTTGCCCACTCCCAACGGCGCGTTCCCATGAGATAGACGACGGCGACGACGTCGTCTCATGCAAG
CATGACATTACTAGCTAGTGTAGCTCTCGATCGGTTTAGCTTTAATCATCATCGATCTTGTGTGGTTTCGGTTAATCAGT
GTGAGGACTCTGAGGGGTTTAATCAAGGGTGTTTTAGTTACTGGTGTTTTTGTTAATCAGTGGGGATCGATCAAGTAACC
TTTTTTACTGTTTACTTATTATTAGGTTTTTACCTAGGGTTTGGTGGTAACTGGGTATAGTGTTTAAGTCGTGATCAATG
CATANATGGGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCGTTCAGGTTGATCCATGTATGGATGTAAGGTTT
ACATTCCCTGCAAGCTCGTGGACGTACTTATCTCAGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis