Browse Element(s) Details


Os.51409.1.S1_at

Description gb:AK062731.1
DB_XREF= gi:32972749
TID=Os.51409.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E05, full insert sequence.
FL= gb:AK062731.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5563011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g55610Os.10328.1.S1_at10/113+31601273..31602898Dof domain, zinc finger family protein, expressed
LOC_Os03g55620Os.12658.1.S1_at11/113+31613534..31617659Serine/threonine-protein kinase 12, putative, expressed
LOC_Os03g55630Os.51409.1.S1_at11/113+31619883..31620695expressed protein
LOC_Os03g55640Os.17562.1.S1_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55640Os.17562.2.S1_x_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55650OsAffx.25722.1.S1_at11/113+31627180..31627632hypothetical protein
LOC_Os03g55660OsAffx.13495.1.S1_x_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55660OsAffx.13495.1.S1_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55660Os.13866.1.S1_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55670Os.13866.2.S1_at8/113+31633526..31635766expressed protein
LOC_Os03g55680OsAffx.25723.1.S1_at11/113+31636702..31637828hypothetical protein
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51409.1.S1_at--1048--6911Chr03:31620109..31620133 (25 bp)
GTAGCAAACCGGTTGATCTCAGTTT
LOC_Os03g55630
Os.51409.1.S1_at--753--451Chr03:31620124..31620148 (25 bp)
ATCTCAGTTTGTGTGTTCTGTTCAA
LOC_Os03g55630
Os.51409.1.S1_at--1137--3071Chr03:31620218..31620242 (25 bp)
AATCAATGCAGTTTATCCAAGCTAA
LOC_Os03g55630
Os.51409.1.S1_at--973--2391Chr03:31620335..31620359 (25 bp)
AAACAGTACCTATGGTCCAGCGCGT
LOC_Os03g55630
Os.51409.1.S1_at--398--3391Chr03:31620352..31620376 (25 bp)
CAGCGCGTCGCACTTGATGTTGTAG
LOC_Os03g55630
Os.51409.1.S1_at--921--2631Chr03:31620431..31620455 (25 bp)
AACCTTATCCAGTAGTGGACGCTTC
LOC_Os03g55630
Os.51409.1.S1_at--467--8111Chr03:31620447..31620471 (25 bp)
GGACGCTTCTTCTTGGAGCAGCTTG
LOC_Os03g55630
Os.51409.1.S1_at--411--2831Chr03:31620493..31620517 (25 bp)
AAGTTCATGTCTTTCGTTTTGCCAC
LOC_Os03g55630
Os.51409.1.S1_at--105--6811Chr03:31620508..31620532 (25 bp)
GTTTTGCCACCAGAACCGTTGACAC
LOC_Os03g55630
Os.51409.1.S1_at--1077--9451Chr03:31620555..31620579 (25 bp)
TCTGGTTCTCATTTACTCATAGGGT
LOC_Os03g55630
Os.51409.1.S1_at--1049--551Chr03:31620607..31620631 (25 bp)
ATCCGTGTATAATTGACTAGGCTGA
LOC_Os03g55630
Target Sequence 
GTAGCAAACCGGTTGATCTCAGTTTGTGTGTTCTGTTCAATTAGTTCAAGACTGCCAAGGCTAGATAAAATCTTGAAGAC
TTGGTTTAGCAATAAAACTCAGGATAGCAAATCAATGCAGTTTATCCAAGCTAAAGTGACATCAATACCTTTGATAAAAT
TCCGTTTGGAGCTTGAGAGGGACATCACTGAAGAGGATGGCATCTGGGAAAATATTTCCAAGTGGAAAACAGTACCTATG
GTCCAGCGCGTCGCACTTGATGTTGTAGCTAAGGTTGAAGAAGAAGGCAGGCTGAAGGCTATGTCAGTGAAGAAGGTTAA
AAAACCTTATCCAGTAGTGGACGCTTCTTCTTGGAGCAGCTTGACTTCAAATATTTCTTTCACAAAGTTCATGTCTTTCG
TTTTGCCACCAGAACCGTTGACACTGGATGTGAAGTGGTGATATTTTCTGGTTCTCATTTACTCATAGGGTTTATAGGAA
ATTGCACATATTAATCAAATCCGTGTATAATTGACTAGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis