Browse Element(s) Details


Os.12658.1.S1_at

Description gb:AK073918.1
DB_XREF= gi:32983941
TID=Os.12658.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074N13, full insert sequence.
FL= gb:AK073918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5562011/11Serine/threonine-protein kinase 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55600Os.10334.1.S1_at11/113+31591670..31597086Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g55610Os.10328.1.S1_at10/113+31601273..31602898Dof domain, zinc finger family protein, expressed
LOC_Os03g55620Os.12658.1.S1_at11/113+31613534..31617659Serine/threonine-protein kinase 12, putative, expressed
LOC_Os03g55630Os.51409.1.S1_at11/113+31619883..31620695expressed protein
LOC_Os03g55640Os.17562.1.S1_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55640Os.17562.2.S1_x_at11/113+31621061..31623992signal peptidase I family protein, expressed
LOC_Os03g55650OsAffx.25722.1.S1_at11/113+31627180..31627632hypothetical protein
LOC_Os03g55660OsAffx.13495.1.S1_x_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55660OsAffx.13495.1.S1_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55660Os.13866.1.S1_at11/113+31628442..31633253nucleoporin, putative, expressed
LOC_Os03g55670Os.13866.2.S1_at8/113+31633526..31635766expressed protein
LOC_Os03g55680OsAffx.25723.1.S1_at11/113+31636702..31637828hypothetical protein
LOC_Os03g55690OsAffx.22940.5.S1_at11/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.1.S1_s_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.5.S1_x_at7/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.3.S1_x_at5/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.35344.18.S1_x_at4/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690OsAffx.22940.2.S1_s_at3/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.38172.1.S1_x_at2/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690Os.43567.1.S1_x_at1/113+31642555..31646748retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016572biological_processhistone phosphorylation
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12658.1.S1_at--633--7291Chr03:31617108..31617132 (25 bp)
GTGCCCGTTCTGAATTTGGACTCAA
LOC_Os03g55620
Os.12658.1.S1_at--524--8531Chr03:31617124..31617148 (25 bp)
TGGACTCAAATCCTTGTGGCTTTCC
LOC_Os03g55620
Os.12658.1.S1_at--894--10651Chr03:31617145..31617169 (25 bp)
TTCCCTGCTCTCTTATTTGTATTTA
LOC_Os03g55620
Os.12658.1.S1_at--44--8331Chr03:31617176..31617200 (25 bp)
GGCTCTTTTATGCAGGTTACTCCGT
LOC_Os03g55620
Os.12658.1.S1_at--627--4591Chr03:31617240..31617264 (25 bp)
GCGAATGCGTTGTTTGCCAGTGGCC
LOC_Os03g55620
Os.12658.1.S1_at--981--4851Chr03:31617341..31617365 (25 bp)
GCTACCTAACTACACTGGCTAATGC
LOC_Os03g55620
Os.12658.1.S1_at--1153--4731Chr03:31617396..31617420 (25 bp)
GCTGTTGTCCGCTCCTAAAGGAAGT
LOC_Os03g55620
Os.12658.1.S1_at--472--1211Chr03:31617440..31617464 (25 bp)
AGTTTATGACCCTAATCCTCATCAG
LOC_Os03g55620
Os.12658.1.S1_at--855--2851Chr03:31617547..31617571 (25 bp)
AAGTGCATGTCTACCTACCTTAGGA
LOC_Os03g55620
Os.12658.1.S1_at--523--3571Chr03:31617581..31617605 (25 bp)
CATATCTTCCCCATATTTGGTCTAG
LOC_Os03g55620
Os.12658.1.S1_at--1134--9531Chr03:31617601..31617625 (25 bp)
TCTAGTTCGGTGTGGTTGCGCTAAT
LOC_Os03g55620
Target Sequence 
GTGCCCGTTCTGAATTTGGACTCAAATCCTTGTGGCTTTCCCTGCTCTCTTATTTGTATTTATTTTTTGGCTCTTTTATG
CAGGTTACTCCGTGTCATTGAGGGACCTGGTGAAGGCTGGTGTAGTATTTTGGCGAATGCGTTGTTTGCCAGTGGCCCGT
ATTTTTTTAGCTAATTAAGTAATTATGGATGTCTATATGTATCCGCTAATCCCNACCTCACTGGGAAGCCCNAAGCTACC
TAACTACACTGGCTAATGCATGACGTGAAGNCCTACCATGTTTATGTTTGCTGTTGTCCGCTCCTAAAGGAAGTTGGCTG
GTGTANCCGTACCAGTTTATGACCCTAATCCTCATCAGTCANCGGTGATAGCATCTTCATTACCCTAAGTNCCATGTTGT
TGTTGTGGATAAAGTTACTTAACGGAAATATAAGTATACCAAGTGCATGTCTACCTACCTTAGGAAAATTGGTTCATATC
TTCCCCATATTTGGTCTAGTTCGGTGTGGTTGCGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis