Browse Element(s) Details


Os.10336.1.S1_at

Description gb:AK065293.1
DB_XREF= gi:32975311
TID=Os.10336.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N07, full insert sequence.
FL= gb:AK065293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4990011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49880Os.13012.1.S1_at11/113+28377677..28379633TCP family transcription factor containing protein, expressed
LOC_Os03g49890OsAffx.3559.1.S1_at11/113+28394232..28394540hypothetical protein
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed
LOC_Os03g49910OsAffx.19542.3.S1_x_at6/113+28407129..28411327retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49920OsAffx.25653.1.S1_at11/113+28414232..28414537hypothetical protein
LOC_Os03g49930OsAffx.13428.3.S1_at10/113+28416126..28418512pentatricopeptide, putative, expressed
LOC_Os03g49940Os.3163.1.A1_at11/113+28419751..28422846Integral membrane protein DUF6 containing protein, expressed
LOC_Os03g49960Os.3166.1.S1_at11/113+28423320..28432844expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10336.1.S1_at--417--1271Chr03:28398587..28398611 (25 bp)
AGATATGCATGGTCTTACTTCCTTG
LOC_Os03g49900
Os.10336.1.S1_at--6--7351Chr03:28398439..28398463 (25 bp)
GTGCAAGAAATGTCCAATCTGCCGT
LOC_Os03g49900
Os.10336.1.S1_at--987--3051Chr03:28398424..28398448 (25 bp)
AATCTGCCGTGTGCCCATTGAAGAA
LOC_Os03g49900
Os.10336.1.S1_at--646--5451Chr03:28398402..28398426 (25 bp)
GAACGCATGCCCGTATATGATGTTT
LOC_Os03g49900
Os.10336.1.S1_at--73--6271Chr03:28398384..28398408 (25 bp)
GATGTTTAAACTTCGCTAACTCAGA
LOC_Os03g49900
Os.10336.1.S1_at--829--3511Chr03:28398340..28398364 (25 bp)
CATGTTGGTTGTGCAATGTCGCGCC
LOC_Os03g49900
Os.10336.1.S1_at--267--771Chr03:28398325..28398349 (25 bp)
ATGTCGCGCCATGTAGTCTCAATCA
LOC_Os03g49900
Os.10336.1.S1_at--579--6651Chr03:28398200..28398224 (25 bp)
GTTGATGATCATTTTGCCGGTTACA
LOC_Os03g49900
Os.10336.1.S1_at--913--7751Chr03:28398129..28398153 (25 bp)
GGTGATCGATAGATGCTCCAGTTAG
LOC_Os03g49900
Os.10336.1.S1_at--123--6611Chr03:28398105..28398129 (25 bp)
GATTGTGTAGCATCTTCTCAAGTTT
LOC_Os03g49900
Os.10336.1.S1_at--278--5531Chr03:28398003..28398027 (25 bp)
GAAAAATGTAAATCTCCCTCCCCAT
LOC_Os03g49900
Target Sequence 
AGATATGCATGGTCTTACTTCCTTGCCGGCACAGAACATTATGCAAGACTTGTTCTGATAAGTGCAAGAAATGTCCAATC
TGCCGTGTGCCCATTGAAGAACGCATGCCCGTATATGATGTTTAAACTTCGCTAACTCAGATGAACGTTACAAATTTGTA
CATGTTGGTTGTGCAATGTCGCGCCATGTAGTCTCAATCACAACTTTAAGCTGATTGAGGTTTGCACAAGTTCAGAAAGG
TTTNCCGAATATGGAGAAAATATAAAGCATATCATGTCTAACCAAAAGCATGAAAAGGTAGTTGATGATCATTTTGCCGG
TTACAATTATGTACTGTAAGTATGTCATCGGTGGTTTTAACTTTTTTTTTTGGTGATCGATAGATGCTCCAGTTAGATTG
TGTAGCATCTTCTCAAGTTTATGCATTGTCTGAATGTAAATAAGAATATTGTCTTGTTTGAGTGTTGTAGTGCTCTTTGG
TTGAGAAGAGTAGAAAAGAAAAATGTAAATCTCCCTCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis