Browse Element(s) Details


Os.10371.1.S1_at

Description gb:AK069387.1
DB_XREF= gi:32979411
TID=Os.10371.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016D17, full insert sequence.
FL= gb:AK069387.1 gb:AK098954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13760OsAffx.18833.1.S1_at11/1111+7568708..7568908hypothetical protein
LOC_Os11g13770OsAffx.30959.1.S1_at11/1111+7571321..7571875hypothetical protein
LOC_Os11g13780NANA11+7573374..7574932retrotransposon protein, putative, unclassified
LOC_Os11g13790NANA11+7575645..7577337retrotransposon protein, putative, unclassified
LOC_Os11g13800Os.19345.1.S1_at11/1111+7579887..7583823expressed protein
LOC_Os11g13800Os.51061.1.S1_at1/1111+7579887..7583823expressed protein
LOC_Os11g13810Os.10371.1.S1_at11/1111+7590762..7602318expressed protein
LOC_Os11g13820OsAffx.18834.1.S1_x_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13820OsAffx.18834.1.S1_at10/1111+7609924..7613829Protein phosphatase 2C containing protein
LOC_Os11g13830OsAffx.30960.1.S1_at11/1111+7615460..7615705hypothetical protein
LOC_Os11g13840NANA11+7623129..7623734AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10371.1.S1_at--78--7671Chr11:7601315..7601339 (25 bp)
GGGATTTATCATGCTGCCTGGTCTC
LOC_Os11g13810
Os.10371.1.S1_at--225--5311Chr11:7601342..7601833 (25 bp)
GAAGGACTTGGGTACTCATTTCAAA
LOC_Os11g13810
Os.10371.1.S1_at--716--2351Chr11:7601831..7601855 (25 bp)
AAACCCCTGAAGCTTGGAACAATGA
LOC_Os11g13810
Os.10371.1.S1_at--250--311Chr11:7601862..7601886 (25 bp)
ATACCGATCGTTGTGCTACATGCGC
LOC_Os11g13810
Os.10371.1.S1_at--742--9871Chr11:7601878..7601902 (25 bp)
TACATGCGCCCTCTTGCAATATGGG
LOC_Os11g13810
Os.10371.1.S1_at--483--10111Chr11:7601897..7601921 (25 bp)
TATGGGCCATACAGTGGGCACTATC
LOC_Os11g13810
Os.10371.1.S1_at--98--1531Chr11:7601939..7601963 (25 bp)
AGCAGACTGCAGATATCCCACAGGA
LOC_Os11g13810
Os.10371.1.S1_at--1153--2731Chr11:7601974..7601998 (25 bp)
AAGAACCAGTTCTCGTATGCTCGGA
LOC_Os11g13810
Os.10371.1.S1_at--135--5351Chr11:7602003..7602027 (25 bp)
GAAGTTGCTGCATTTACCTGAAGAC
LOC_Os11g13810
Os.10371.1.S1_at--38--271Chr11:7602102..7602126 (25 bp)
ATATGCTCCTTATTGTTGGGTGTCC
LOC_Os11g13810
Os.10371.1.S1_at--944--7251Chr11:7602123..7602147 (25 bp)
GTCCATTGGCCGTATTTTCATTGTT
LOC_Os11g13810
Target Sequence 
GGGATTTATCATGCTGCCTGGTCTCCAGAAGGACTTGGGTACTCATTTCAAACCCCTGAAGCTTGGAACAATGACGATGA
ATACCGATCGTTGTGCTACATGCGCCCTCTTGCAATATGGGCCATACAGTGGGCACTATCAAACCCAAAACTCCACAAGC
AGACTGCAGATATCCCACAGGACTCTTTCCCAAAGAACCAGTTCTCGTATGCTCGGATTGCGAAGTTGCTGCATTTACCT
GAAGACGAATCGCCGAAGAGTTTCCTTCGAGTGATTTATGAGATTGTTCGTAACAGGTATAGGTCCTGATGGAAGGGCAA
ATATGCTCCTTATTGTTGGGTGTCCATTGGCCGTATTTTCATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis