Browse Element(s) Details


Os.10378.1.A1_at

Description gb:CB619949
DB_XREF= gi:29614936
DB_XREF=OSIIEa04N12.r
CLONE=OSIIEa04N12
TID=Os.10378.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.10378 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568373.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g725708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein
LOC_Os01g72579NANA1+42429725..42430106NA
LOC_Os01g72590NANA1+42437325..42437531hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10378.1.A1_at--427--6031Chr01:42422251..42422391 (25 bp)
GAGATGCCGTCGACTTGTGGGTCCC
LOC_Os01g72570
Os.10378.1.A1_at--9--4311NONE
CCTTCTCTGGGAGGTCGAGGATTCA
NONE
Os.10378.1.A1_at--922--8011Chr01:42422433..42422457 (25 bp)
GGCAGGGAGGCCATGACCCCGACAA
LOC_Os01g72570
Os.10378.1.A1_at--472--691NONE
ATGACCCCGACAAGCATCGGGTGAT
NONE
Os.10378.1.A1_at--291--9031Chr01:42422482..42422506 (25 bp)
TGCAAATTGCAATGCCTCCTGGCAA
LOC_Os01g72570
Os.10378.1.A1_at--718--8491NONE
TGGCAATTGGCGAAAACACCGGCAA
NONE
Os.10378.1.A1_at--454--2471Chr01:42422515..42422539 (25 bp)
AACACCGGCAATCCGGTTGCTGGAT
LOC_Os01g72570
Os.10378.1.A1_at--40--6691Chr01:42422530..42422554 (25 bp)
GTTGCTGGATTTCAGTATGGCTCAA
LOC_Os01g72570
Os.10378.1.A1_at--391--6931Chr01:42422544..42422568 (25 bp)
GTATGGCTCAACTCAGTATCTGATT
LOC_Os01g72570
Os.10378.1.A1_at--89--6491Chr01:42422639..42422663 (25 bp)
GATAGCTTATGCATAGGTGGGTATA
LOC_Os01g72570
Os.10378.1.A1_at--429--3171Chr01:42422667..42422691 (25 bp)
AATTGTCAAAGCGTGTCAGTGTAAT
LOC_Os01g72570
Target Sequence 
GAGATGCCGTCGACTTGTGGGTCCCTTCTCTGGGAGGTCGAGGATTCAGGTGGTCCCCGGGGGTGCGGCAGGGAGGCCAT
GACCCCGACAAGCATCGGGTGATGGGGATCTAGAGTGCAAATTGCAATGCCTCCTGGCAATTGGCGAAAACACCGGCAAT
CCGGTTGCTGGATTTCAGTATGGCTCAACTCAGTATCTGATTGAAAGGTCGACTTGGGTATGAGTTTTTAGACTTGGCAA
AAAAACTCGTGTTTTATAATTTAATTCTAGAAGATAGCTTATGCATAGGTGGGTATATTTAATTGTCAAAGCGTGTCAGT
GTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10378.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis