Browse Element(s) Details


Os.10378.3.S1_s_at

Description gb:CB620062
DB_XREF= gi:29615049
DB_XREF=OSIIEa05A07.f
CLONE=OSIIEa05A07
TID=Os.10378.3
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10378 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568373.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7257011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein
LOC_Os01g72579NANA1+42429725..42430106NA
LOC_Os01g72590NANA1+42437325..42437531hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10378.3.S1_s_at--1119--3751Chr01:42416187..42416211 (25 bp)
CTCTTGGAGGCTTTATCAGCAGCAT
LOC_Os01g72570
Os.10378.3.S1_s_at--602--7591Chr01:42416529..42416553 (25 bp)
GGGCTTCGATACCAATACTGTCACA
LOC_Os01g72570
Os.10378.3.S1_s_at--901--3411Chr01:42416637..42416661 (25 bp)
CAGACGTATCTTGTTTGGCAGCTTC
LOC_Os01g72570
Os.10378.3.S1_s_at--959--9531Chr01:42417407..42417431 (25 bp)
TCTAGTGCTGGTGCTTCATTAAAAG
LOC_Os01g72570
Os.10378.3.S1_s_at--308--1951Chr01:42417434..42417458 (25 bp)
ACTGGAATTTTGTGGCCACTGCTCA
LOC_Os01g72570
Os.10378.3.S1_s_at--395--8451Chr01:42417447..42417471 (25 bp)
GGCCACTGCTCATGATAATATCGTT
LOC_Os01g72570
Os.10378.3.S1_s_at--315--4811Chr01:42417795..42417819 (25 bp)
GCTCGGTTGATCTTTTTGTCGTCAA
LOC_Os01g72570
Os.10378.3.S1_s_at--255--3271Chr01:42417817..42417841 (25 bp)
CAACTCATATGGCTCTGCTTATCAA
LOC_Os01g72570
Os.10378.3.S1_s_at--151--7171Chr01:42417934..42417958 (25 bp)
GTCTCTTGTTGCCATTCTTGTCAAA
LOC_Os01g72570
Os.10378.3.S1_s_at--1035--1791Chr01:42418008..42418032 (25 bp)
ACCGCCTGCTTTCTGAACATGGGAT
LOC_Os01g72570
Os.10378.3.S1_s_at--631--2111Chr01:42418024..42418045 (22 bp)
ACATGGGATCACTATCTTCTGGCTG
LOC_Os01g72570
Target Sequence 
CTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACA
GACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCT
TTCTTGTGACGGTTGGNGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTG
TGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTATTNGAANGAGATAATATTTCTGAATGCTG
CCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGT
CTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACNTCAGAGATGGCACCGCCTG
CTTTCTGAACATGGGATCACTATCTTCTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10378.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis