Browse Element(s) Details


OsAffx.2462.1.S1_at

Description tigr:9629.m07176
TID=OsAffx.2462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7254011/11EF hand family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein
LOC_Os01g72579NANA1+42429725..42430106NA

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009612biological_processresponse to mechanical stimulus
GO:0009646biological_processresponse to absence of light
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010038biological_processresponse to metal ion
GO:0019722biological_processcalcium-mediated signaling
GO:0042542biological_processresponse to hydrogen peroxide
GO:0048574biological_processlong-day photoperiodism, flowering
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2462.1.S1_at--481--10851Chr01:42405931..42405955 (25 bp)
TTGGATCGTTCGACCAGGACGGCGA
LOC_Os01g72540
OsAffx.2462.1.S1_at--933--9131Chr01:42405883..42405907 (25 bp)
TGCGGCTCTGCGTGAAGGCGTCCCT
LOC_Os01g72540
OsAffx.2462.1.S1_at--124--831Chr01:42405821..42405845 (25 bp)
ATGGCGTTGGCGGACACCGACGGCG
LOC_Os01g72540
OsAffx.2462.1.S1_at--1049--1931Chr01:42405802..42405826 (25 bp)
ACGGCGACGGGTTGCTGGACGAAGA
LOC_Os01g72540
OsAffx.2462.1.S1_at--565--1871Chr01:42405715..42405739 (25 bp)
ACGAGACGTGCAGGTGCCTAAGGGA
LOC_Os01g72540
OsAffx.2462.1.S1_at--394--4291Chr01:42405699..42405723 (25 bp)
CCTAAGGGAGGCGTTTGCGATGTAC
LOC_Os01g72540
OsAffx.2462.1.S1_at--279--2891Chr01:42405667..42405691 (25 bp)
AAGGGAGAGGATGCATCACGCCGCT
LOC_Os01g72540
OsAffx.2462.1.S1_at--42--9691Chr01:42405652..42405676 (25 bp)
TCACGCCGCTGAGCCTGAAGCTGAT
LOC_Os01g72540
OsAffx.2462.1.S1_at--1015--9111Chr01:42405628..42405652 (25 bp)
TGCTGAGCAAGCTGGGCACGCACCT
LOC_Os01g72540
OsAffx.2462.1.S1_at--441--5091Chr01:42405613..42405637 (25 bp)
GCACGCACCTGGACGTTGCAGAGTG
LOC_Os01g72540
OsAffx.2462.1.S1_at--821--8531Chr01:42405604..42405628 (25 bp)
TGGACGTTGCAGAGTGCCAGGCCAT
LOC_Os01g72540
Target Sequence 
TTGGATCGTTCGACCAGGACGGCGACGGCAAGATCTCCGCCACCGAGCTGCGGCTCTGCGTGAAGGCGTCCCTCGGCGAG
GACATGCCGGACGAGGAGGTGCAGGCGCTCATGGCGTTGGCGGACACCGACGGCGACGGGTTGCTGGACGAAGAGGAGTT
CGTGAGGCTGGTGACAGAAATGGAGGCGGATGGTGATGAGGAAGAAGACGACGACGACGAGACGTGCAGGTGCCTAAGGG
AGGCGTTTGCGATGTACGAGATGGAAGGGAGAGGATGCATCACGCCGCTGAGCCTGAAGCTGATGCTGAGCAAGCTGGGC
ACGCACCTGGACGTTGCAGAGTGCCAGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis