Browse Element(s) Details


Os.18922.2.S1_at

Description gb:AK062671.1
DB_XREF= gi:32972689
TID=Os.18922.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009J14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G04, full insert sequence.
FL= gb:AK062671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7253011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18922.2.S1_at--1108--4851Chr01:42401192..42401216 (25 bp)
GCTAGCTCCATCAGAGCGCGCGCAT
LOC_Os01g72530
Os.18922.2.S1_at--984--4571Chr01:42401173..42401197 (25 bp)
GCGCATCCATCGATCTGCAGTACAA
LOC_Os01g72530
Os.18922.2.S1_at--585--3531Chr01:42401166..42401190 (25 bp)
CATCGATCTGCAGTACAAGTAGTGT
LOC_Os01g72530
Os.18922.2.S1_at--431--2831Chr01:42401150..42401174 (25 bp)
AAGTAGTGTTCTTGCAGCGTGTCGT
LOC_Os01g72530
Os.18922.2.S1_at--707--8791Chr01:42401144..42401168 (25 bp)
TGTTCTTGCAGCGTGTCGTGTATAT
LOC_Os01g72530
Os.18922.2.S1_at--1035--9031Chr01:42401138..42401162 (25 bp)
TGCAGCGTGTCGTGTATATACACAT
LOC_Os01g72530
Os.18922.2.S1_at--762--3991Chr01:42401128..42401152 (25 bp)
CGTGTATATACACATAGGTGCTGTA
LOC_Os01g72530
Os.18922.2.S1_at--757--1031Chr01:42401113..42401137 (25 bp)
AGGTGCTGTAAATCATGCTCAGTTC
LOC_Os01g72530
Os.18922.2.S1_at--233--6611Chr01:42401084..42401108 (25 bp)
GATTGGTTTAGGTGTTTATACATCA
LOC_Os01g72530
Os.18922.2.S1_at--217--10091Chr01:42401076..42401100 (25 bp)
TAGGTGTTTATACATCATTCATTTC
LOC_Os01g72530
Os.18922.2.S1_at--472--7971Chr01:42401001..42401025 (25 bp)
GGATCTGTAAATGCTTCATGGATTT
LOC_Os01g72530
Target Sequence 
GCTAGCTCCATCAGAGCGCGCGCATCCATCGATCTGCAGTACAAGTAGTGTTCTTGCAGCGTGTCGTGTATATACACATA
GGTGCTGTAAATCATGCTCAGTTCACTNGATTGGTTTAGGTGTTTATACATCATTCATTTCATTTGTTAATAATGGGATT
TATACATAGTAAATTCATTTCATTTGTTGATGGATCTGTAAATGCTTCATGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18922.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis