Browse Element(s) Details


Os.10380.1.S1_at

Description gb:AK119274.1
DB_XREF= gi:37988897
TID=Os.10380.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-B06, full insert sequence.
FL= gb:AK119274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g196804/11ABC-type transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19660OsAffx.17785.1.S1_x_at11/119+11760978..11761366NA
LOC_Os09g19670Os.14058.1.S1_at1/119+11766727..11770432retrotransposon protein, putative, unclassified
LOC_Os09g19680Os.10380.1.S1_at4/119+11777331..11784017ABC-type transport protein, putative, expressed
LOC_Os09g19690OsAffx.6336.1.S1_at11/119+11786006..11786278hypothetical protein
LOC_Os09g19700Os.8030.1.S1_at11/119+11788181..11792358Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10380.1.S1_at--479--2571Chr09:11783788..11783812 (25 bp)
AACGGCTAGTTCATGACTTGTCTCC
LOC_Os09g19680
Os.10380.1.S1_at--262--9611Chr09:11783798..11783822 (25 bp)
TCATGACTTGTCTCCGAGCGCAAAT
LOC_Os09g19680
Os.10380.1.S1_at--822--5851Chr09:11783813..11783837 (25 bp)
GAGCGCAAATAAGATCTACCACCTA
LOC_Os09g19680
Os.10380.1.S1_at--634--431Chr09:11783826..11783850 (25 bp)
ATCTACCACCTATCTGGAACTCAAA
LOC_Os09g19680
Os.10380.1.S1_at--652--6571Chr09:11784090..11784114 (25 bp)
GATTCTTTAAAGTTCGAGCTGCCAA
NONE
Os.10380.1.S1_at--823--7631Chr09:11784236..11784260 (25 bp)
GGGAGCAAAGGCATCCAGTGATAAT
NONE
Os.10380.1.S1_at--242--231Chr09:11784032..11784056 (25 bp)
ATATTGTGAGATTTATAGGCCGACT
NONE
Os.10380.1.S1_at--303--10091Chr09:11784047..11784071 (25 bp)
TAGGCCGACTAATATTCTTTTATGT
NONE
Os.10380.1.S1_at--1122--7132Chr09:11784319..11784343 (25 bp)
GTCTTGACTTTAGCATATATGATTC
NONE
Os.10380.1.S1_at--1053--231Chr09:11784333..11784357 (25 bp)
ATATATGATTCTTTTGTGGTTGTAC
NONE
Os.10380.1.S1_at--1103--411Chr09:11784444..11784468 (25 bp)
ATCATTGCAGATATGCGGGAATTAC
NONE
Target Sequence 
AACGGCTAGTTCATGACTTGTCTCCGAGCGCAAATAAGATCTACCACCTATCTGGAACTCAAAAGTTCGAGCTGCCAAAG
CAAGAGGTGAAAATAGCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGT
TGATACCACCTTGGAGGATGTCTTCATAAAGCATATATGATTCTTTAAAGTTCGAGCTGCCAAAGCAAGAGGTGAAAATA
GCCGAGGTATTTCGCGCAGTTGAGGATGCGAAGAAACGGTTCACCGTGCATGCCTGGGGCCTGGTTGATACCACCTTGGA
GGATGTCTTCATAAAGGTTGCCAAGGGAGCAAAGGCATCCAGTGATAATAGTTAGTTTGTGCATTGATAATATTGTGAGA
TTTATAGGCCGACTAATATTCTTTTATGTCTTGACTTTAGCATATATGATTCTTTTGTGGTTGTACAGAAACATATTATT
CTCATACATCAGAAAAAAAAGTAACCATATGTAACATTTTTGTTTATTTTAAATGTACAAATGACTCAATATATCATTGC
AGATATGCGGGAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis