Browse Element(s) Details


Os.6334.1.S1_at

Description gb:AK120689.1
DB_XREF= gi:37990312
TID=Os.6334.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169E21, full insert sequence.
FL= gb:AK120689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1973411/11isochorismate synthases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19680Os.10380.1.S1_at4/119+11777331..11784017ABC-type transport protein, putative, expressed
LOC_Os09g19690OsAffx.6336.1.S1_at11/119+11786006..11786278hypothetical protein
LOC_Os09g19700Os.8030.1.S1_at11/119+11788181..11792358Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0009617biological_processresponse to bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0009697biological_processsalicylic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0009536cellular_componentplastid
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
GO:0008909molecular_functionisochorismate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6334.1.S1_at--6--5271Chr09:11813169..11813193 (25 bp)
GAATGTATGCTGGACCTGTTGGTTG
LOC_Os09g19734
Os.6334.1.S1_at--38--6631Chr09:11813222..11813246 (25 bp)
GTTGGGATTAGATCAGCACTACTAG
LOC_Os09g19734
Os.6334.1.S1_at--873--7031Chr09:11813421..11813445 (25 bp)
GTACAAATCCATCCTTTGAATGGGA
LOC_Os09g19734
Os.6334.1.S1_at--298--2971Chr09:11813439..11813463 (25 bp)
AATGGGATGAGCTTGACCTCAAAGC
LOC_Os09g19734
Os.6334.1.S1_at--485--10371Chr09:11814022..11814046 (25 bp)
TTTTTTCCTGCCATGAACTTCAAAG
LOC_Os09g19734
Os.6334.1.S1_at--107--6612Chr09:11814047..11814071 (25 bp)
GATTGTCTTGTTCAAGTGCTTGCAT
LOC_Os09g19734
Os.6334.1.S1_at--474--4911Chr09:11814064..11814088 (25 bp)
GCTTGCATACCAATTATGTTTCCGA
LOC_Os09g19734
Os.6334.1.S1_at--348--1671Chr09:11814114..11814138 (25 bp)
AGCCGCTGAAGCATAAATCCAAGAA
LOC_Os09g19734
Os.6334.1.S1_at--78--171Chr09:11814196..11814220 (25 bp)
ATTATTCAGTTAGTGCAGTTGTGCA
LOC_Os09g19734
Os.6334.1.S1_at--158--8991Chr09:11814230..11814254 (25 bp)
TGAACCTCATAGTTTGTTAGCTTCT
LOC_Os09g19734
Os.6334.1.S1_at--1145--6771Chr09:11814245..11814269 (25 bp)
GTTAGCTTCTTTCGAATCGCTTATA
LOC_Os09g19734
Target Sequence 
GAATGTATGCTGGACCTGTTGGTTGGTTTGGAGGAGCTGAAAGTGAGTTNGCTGTTGGGATTAGATCAGCACTACTAGGA
AAAGGTCATAGCACTTTAGTTTNTGCTGGTGCCGGAATTGTTGAAGGTACAAATCCATCCTTTGAATGGGATGAGCTTGA
CCTCAAAGCATCNCAGTTTGCAAAGTTANTGCAGTATCAAGAACAACATATTTGCTTGCAAGAGGCTGAAAATATGGGAA
CAGTGATTTGAATTGTAACTAGGAGTTTTTGTTTTGTTGTGAAGAAGATTTGCTTTTTTTTTTCCTGCCATGAACTTCAA
AGGATTGTCTTGTTCAAGTGCTTGCATACCAATTATGTTTCCGATCAATCAAACACCTCCTACATACGCAGCCGCTGAAG
CATAAATCCAAGAAGGCGACGAAGATAAAAGTTGCGAAGAGTACAAAGGCTATATGTACAATAAATTGTTAATTATTCAG
TTAGTGCAGTTGTGCAAGTATATATTGAACCTCATAGTTTGTTAGCTTCTTTCGAATCGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis