Browse Element(s) Details


Os.57110.1.S1_at

Description gb:AK110933.1
DB_XREF= gi:32996142
TID=Os.57110.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F12, full insert sequence.
FL= gb:AK110933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1972011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19680Os.10380.1.S1_at4/119+11777331..11784017ABC-type transport protein, putative, expressed
LOC_Os09g19690OsAffx.6336.1.S1_at11/119+11786006..11786278hypothetical protein
LOC_Os09g19700Os.8030.1.S1_at11/119+11788181..11792358Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57110.1.S1_at--128--9331Chr09:11799330..11799354 (25 bp)
TCGCTTAAATTCAACCGGCCAGGTG
LOC_Os09g19720
Os.57110.1.S1_at--387--8851Chr09:11799196..11799220 (25 bp)
TGATCGCGCGGGTGTTCTCGCAGCT
LOC_Os09g19720
Os.57110.1.S1_at--1141--1591Chr09:11799156..11799176 (21 bp)
AGCTGCTCGCTCGTGTGCAGGCAAT
LOC_Os09g19720
Os.57110.1.S1_at--130--8691Chr09:11798609..11798629 (21 bp)
TGTGCAGGCAATGGTACCGCGACTC
LOC_Os09g19720
Os.57110.1.S1_at--1116--5411Chr09:11798539..11798563 (25 bp)
GAACCAGTTTGGTCTCTACGTCAAG
LOC_Os09g19720
Os.57110.1.S1_at--295--6451Chr09:11798476..11798500 (25 bp)
GATCAGAACCCTGCGAGGCCTGTGT
LOC_Os09g19720
Os.57110.1.S1_at--377--891Chr09:11798461..11798485 (25 bp)
AGGCCTGTGTTCCTGAGAACTGCTG
LOC_Os09g19720
Os.57110.1.S1_at--429--8251Chr09:11798384..11798408 (25 bp)
GGCACCAACTTCTGTATTGCACATG
LOC_Os09g19720
Os.57110.1.S1_at--413--10411Chr09:11798333..11798357 (25 bp)
TTTTGGGTAGTGTCAGTGCTGCCTC
LOC_Os09g19720
Os.57110.1.S1_at--989--4771Chr09:11798316..11798340 (25 bp)
GCTGCCTCTGCAACAGATTCATCAG
LOC_Os09g19720
Os.57110.1.S1_at--423--3511Chr09:11798254..11798278 (25 bp)
CATGGTGGATTGCTCTTCTGTATAA
LOC_Os09g19720
Target Sequence 
TCGCTTAAATTCAACCGGCCAGGTGGGGATTTCCTAGGAGAGGAAGGCGATGGCGCCGCCGCGGAAGCAGCAGCAGGAGG
AGGAGATGGTTGCCGGCGGAGGCGAGGCGGCGGCGCTGCGGGCGCCGGCGGACGTGATCGCGCGGGTGTTCTCGCAGCTG
GACTGCGTCGACCTCCTCAGCTGCTCGCTCGTGTGCAGGCAATGGTACCGCGACTCCGCGGAGCTGCGAGAGGAGTGGAG
AAAGGAGTACATGGAGGCCTGGAACCAGTTTGGTCTCTACGTCAAGCAGCAGCCGCAGCAGCCATGCCCGACCTGCTCAA
GCTCGATCAGAACCCTGCGAGGCCTGTGTTCCTGAGAACTGCTGCTCCCTCCATTCCCTGTCCTGCCATTTTCACAAAGG
CAAAACATTTGTAGATGGCACCAACTTCTGTATTGCACATGAGCATTGGTGGTGGCAGACTTGTGTGTTTTGGGTAGTGT
CAGTGCTGCCTCTGCAACAGATTCATCAGTATGTGTGTACATGGTGAATAAAACTGATGTTAGTTACATGGTGGATTGCT
CTTCTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis