Browse Element(s) Details


OsAffx.29927.1.S1_at

Description tigr:9637.m01673
TID=OsAffx.29927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1976011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29927.1.S1_at--835--3351Chr09:11825721..11825745 (25 bp)
CACCCTTGTCTGTAGCAAGAGCCAC
LOC_Os09g19760
OsAffx.29927.1.S1_at--508--10811Chr09:11825726..11825750 (25 bp)
TTGTCTGTAGCAAGAGCCACCGGTG
LOC_Os09g19760
OsAffx.29927.1.S1_at--786--9431Chr09:11825729..11825753 (25 bp)
TCTGTAGCAAGAGCCACCGGTGGTC
LOC_Os09g19760
OsAffx.29927.1.S1_at--613--6951Chr09:11825732..11825756 (25 bp)
GTAGCAAGAGCCACCGGTGGTCAAA
LOC_Os09g19760
OsAffx.29927.1.S1_at--14--5871Chr09:11825739..11825763 (25 bp)
GAGCCACCGGTGGTCAAAATCTCAT
LOC_Os09g19760
OsAffx.29927.1.S1_at--641--1751Chr09:11825744..11825768 (25 bp)
ACCGGTGGTCAAAATCTCATGGACA
LOC_Os09g19760
OsAffx.29927.1.S1_at--198--7491Chr09:11825748..11825772 (25 bp)
GTGGTCAAAATCTCATGGACAGGAG
LOC_Os09g19760
OsAffx.29927.1.S1_at--430--7591Chr09:11825818..11825842 (25 bp)
GGGAAGGAACCTGCACTACAGCCGC
LOC_Os09g19760
OsAffx.29927.1.S1_at--312--2931Chr09:11825821..11825845 (25 bp)
AAGGAACCTGCACTACAGCCGCTGT
LOC_Os09g19760
OsAffx.29927.1.S1_at--693--4731Chr09:11825841..11825865 (25 bp)
GCTGTGCTGCCGACACTACTAGAAA
LOC_Os09g19760
OsAffx.29927.1.S1_at--605--173Chr09:11825870..11825894 (25 bp)
ATTTTTGCTGGCGGCCAAAATGAGT
LOC_Os09g19760
Target Sequence 
CACCCTTGTCTGTAGCAAGAGCCACCGGTGGTCAAAATCTCATGGACAGGAGAGGGAAGAGACATGAGGGGAGAAGAGAA
AGAAGAGGGAAAGAGAGGGGAAGGAACCTGCACTACAGCCGCTGTGCTGCCGACACTACTAGAAAAACTATTTTTGCTGG
CGGCCAAAATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis