Browse Element(s) Details


Os.14152.1.S1_at

Description gb:AK068165.1
DB_XREF= gi:32978183
TID=Os.14152.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full insert sequence.
FL= gb:AK068165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1979011/11Peptidase family M1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed
LOC_Os09g19800NANA9+11852027..11856936Puromycin-sensitive aminopeptidase, putative
LOC_Os09g19810Os.53813.1.S1_at1/119+11857270..11859996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19820Os.51599.1.S1_at11/119+11861273..11865370aminopeptidase, putative, expressed
LOC_Os09g19830Os.52449.1.S1_at11/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19830Os.35502.1.A1_at10/119+11868806..11873415YDG/SRA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0004179molecular_functionmembrane alanyl aminopeptidase activity
GO:0009983molecular_functiontyrosine aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14152.1.S1_at--618--8191Chr09:11849568..11849592 (25 bp)
GGAAGTTCCCTCATATCGGATTTCA
LOC_Os09g19790
Os.14152.1.S1_at--522--51Chr09:11849601..11849718 (25 bp)
ATTGTTACACTGTTCACCTCGAAAG
LOC_Os09g19790
Os.14152.1.S1_at--422--2611Chr09:11849881..11849905 (25 bp)
AACCCTGATCTGTATCCGGTGTGAT
LOC_Os09g19790
Os.14152.1.S1_at--944--91Chr09:11849926..11849950 (25 bp)
ATTCCCTGCTATGAAGTGCCAACTT
LOC_Os09g19790
Os.14152.1.S1_at--643--5111Chr09:11849985..11850009 (25 bp)
GCACATTGTTGCTCTCTGTTTATAA
LOC_Os09g19790
Os.14152.1.S1_at--778--231Chr09:11850046..11850070 (25 bp)
ATATAGTGCTTACCGTTTCTCTTCA
LOC_Os09g19790
Os.14152.1.S1_at--761--271Chr09:11850070..11850094 (25 bp)
ATAGGTTGTGTACAGCTTGTGCCCA
LOC_Os09g19790
Os.14152.1.S1_at--672--10811Chr09:11850086..11850110 (25 bp)
TTGTGCCCAGGAGCCATGCATATGA
LOC_Os09g19790
Os.14152.1.S1_at--740--6631Chr09:11850118..11850142 (25 bp)
GTTGTCGCACAATTCTACTGTAGCT
LOC_Os09g19790
Os.14152.1.S1_at--182--5911Chr09:11850195..11850219 (25 bp)
GAGCTCAACTATTTGTCGGGCGATT
LOC_Os09g19790
Os.14152.1.S1_at--1010--6591Chr09:11850216..11850240 (25 bp)
GATTGTTCTCCTTGGCCATGATAAC
LOC_Os09g19790
Target Sequence 
GGAAGTTCCCTCATATCGGATTTCATAAGATCTATTGTTACACTGTTCACCTCGAAAGAGAAGGAAGCAGAGATCTCCCA
NGTTCTTCGCGACCCGCACTAAGCCCGGGTACGAGAGGACACTGAAGCAGAGCCTCGAGAGGGTGCTGATCAACGCCAGG
TGGATCGAAGGCATCAGGGGTGAAGCTAAGCTTGCTCAGACTGTCCATGAGCTTCTTCACAAACCCTGATCTGTATCCGG
TGTGATCCCTCCCCCCCGGGAGCTGCATTCCCTGCTATGAAGTGCCAACTTTAGGCGAAGCATTTGTCGTAGCAGCAGCA
TCCCAGCACATTGTTGCTCTCTGTTTATAAGTCATGAAGCATAGGCTGCATACGAGGCAAAGGGATATATAGTGCTTACC
GTTTCTCTTCATAGGTTGTGTACAGCTTGTGCCCAGGAGCCATGCATATGATTCAAGAGTTGTCGCACAATTCTACTGTA
GCTTTGAAGTGTCCGAGTGAATAAGATTTTACCTTTCAGCATTCTGTATCAGACCGAGCTCAACTATTTGTCGGGCGATT
GTTCTCCTTGGCCATGATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis