Browse Element(s) Details


Os.52449.1.S1_at

Description gb:AK067187.1
DB_XREF= gi:32977205
TID=Os.52449.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52449 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096C06, full insert sequence.
FL= gb:AK067187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1983011/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed
LOC_Os09g19800NANA9+11852027..11856936Puromycin-sensitive aminopeptidase, putative
LOC_Os09g19810Os.53813.1.S1_at1/119+11857270..11859996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19820Os.51599.1.S1_at11/119+11861273..11865370aminopeptidase, putative, expressed
LOC_Os09g19830Os.52449.1.S1_at11/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19830Os.35502.1.A1_at10/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19840OsAffx.29929.1.S1_at11/119+11878033..11878467hypothetical protein
LOC_Os09g19850Os.35754.1.S1_at11/119+11879514..11884068CRS1/YhbY domain containing protein, expressed
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0008168molecular_functionmethyltransferase activity
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52449.1.S1_at--259--7071Chr09:11872675..11872699 (25 bp)
GTAAGATCTCTGAGCTCTATCTCTT
LOC_Os09g19830
Os.52449.1.S1_at--332--9551Chr09:11872690..11872714 (25 bp)
TCTATCTCTTCAGGCAGTTTCGTAT
LOC_Os09g19830
Os.52449.1.S1_at--352--3431Chr09:11872704..11872728 (25 bp)
CAGTTTCGTATGTGAGTATGCAGGT
LOC_Os09g19830
Os.52449.1.S1_at--705--5991Chr09:11872762..11872786 (25 bp)
GAGACTGATGAGTACCTTTTTGATA
LOC_Os09g19830
Os.52449.1.S1_at--904--6971Chr09:11872773..11872797 (25 bp)
GTACCTTTTTGATATTGGTCATCAC
LOC_Os09g19830
Os.52449.1.S1_at--396--3491Chr09:11872801..11872825 (25 bp)
CATGATGAAGTTTGGGAGGATCCTA
LOC_Os09g19830
Os.52449.1.S1_at--473--6171Chr09:11872816..11872840 (25 bp)
GAGGATCCTAAATTTGAAGGCATTT
LOC_Os09g19830
Os.52449.1.S1_at--181--8251Chr09:11872834..11872858 (25 bp)
GGCATTTTGGGTCTAGAATCTTCTA
LOC_Os09g19830
Os.52449.1.S1_at--745--1471Chr09:11872848..11872872 (25 bp)
AGAATCTTCTACGTCCAAGACAACG
LOC_Os09g19830
Os.52449.1.S1_at--754--5611Chr09:11872866..11872890 (25 bp)
GACAACGGAGGATACTGAAGGCAGT
LOC_Os09g19830
Os.52449.1.S1_at--1023--2451Chr09:11872893..11872917 (25 bp)
AACAACGGAGGATACTGAAGGCAGT
LOC_Os09g19830
Target Sequence 
GTAAGATCTCTGAGCTCTATCTCTTCAGGCAGTTTCGTATGTGAGTATGCAGGTGAGGTGCTGCAAGAAAATGGAGATGA
ACATGTAGAGACTGATGAGTACCTTTTTGATATTGGTCATCACTATCATGATGAAGTTTGGGAGGATCCTAAATTTGAAG
GCATTTTGGGTCTAGAATCTTCTACGTCCAAGACAACGGAGGATACTGAAGGCAGTAAAACAACGGAGGATACTGAAGGC
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis