Browse Element(s) Details


Os.53813.1.S1_at

Description gb:AK100229.1
DB_XREF= gi:32985438
TID=Os.53813.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048L06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048L06, full insert sequence.
FL= gb:AK100229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g441901/11expressed protein
LOC_Os09g198101/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g530401/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g44160OsAffx.26452.1.S1_at11/114+25919936..25920142hypothetical protein
LOC_Os04g44170NANA4+25929178..25929798hypothetical protein
LOC_Os04g44180OsAffx.4082.1.S1_at11/114+25934535..25938038hypothetical protein
LOC_Os04g44190Os.52615.1.S1_at11/114+25939763..25947697expressed protein
LOC_Os04g44190Os.51599.2.S1_at10/114+25939763..25947697expressed protein
LOC_Os04g44190Os.53813.1.S1_at1/114+25939763..25947697expressed protein
LOC_Os04g44200OsAffx.4083.1.S1_at11/114+25948810..25949456Oxygen-evolving enhancer protein 3, chloroplast precursor, putative
LOC_Os04g44210Os.49430.1.S1_s_at11/114+25949578..25954823expressed protein
LOC_Os04g44210Os.7655.1.S2_at1/114+25949578..25954823expressed protein
LOC_Os04g44220Os.49961.1.S1_at11/114+25958167..25960749expressed protein
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019684biological_processphotosynthesis, light reaction
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53813.1.S1_at--1054--3651NONE
CTTAGGCGACGACCGTAATCGCGAC
NONE
Os.53813.1.S1_at--432--8491NONE
TGGCTCGCGTTACTAGCTTCGATGA
NONE
Os.53813.1.S1_at--601--4911NONE
GCTTCGATGATAGGACGCTAACTCT
NONE
Os.53813.1.S1_at--67--5811NONE
GACGCTAACTCTCCGATATCCTGAA
NONE
Os.53813.1.S1_at--511--2551NONE
AACTCGCCGGCGCTAATTTGGCTCT
NONE
Os.53813.1.S1_at--323--5591NONE
GAAATAACTTGGTAGTGCTCTCTCT
NONE
Os.53813.1.S1_at--418--7311NONE
GTGCTCTCTCTAATTCGTTGAGGTA
NONE
Os.53813.1.S1_at--1054--7891NONE
GGTTGAGAAACTTCTTTCTTGAGTT
NONE
Os.53813.1.S1_at--1023--1811NONE
ACTGTTACTAACCTAGTTCAGCATG
NONE
Os.53813.1.S1_at--221--7653Chr04:31374243..31374267 (25 bp)
GGGAGTGTACTTCATCGTGTAACAA
LOC_Os04g53040
Os.53813.1.S1_at--744--751NONE
ATGTGTTGGCACATGAGGCCCATAT
NONE
Target Sequence 
CTTAGGCGACGACCGTAATCGCGACCTGGCTCGCGTTACTAGCTTCGATGATAGGACGCTAACTCTCCGATATCCTGAAC
TCGCCGGCGCTAATTTGGCTCTTTGGAGGAGTAAGAAATAACTTGGTAGTGCTCTCTCTAATTCGTTGAGGTAGAATATA
GGGTAATGCTAGTGAGTTTAAGTGACTTGTTATGGTTGAGAAACTTCTTTCTTGAGTTAAAGTTGTTAATGAATATCTTT
ATGAAGTTGTGGTGTGATAATAAGCTGGTTATTACTACTGTTACTAACCTAGTTCAGCATGAACGAACAAAACTATGTGG
AGATAGATCGTTTTTTTATCAAGGAAAAACTAGATGAAGGGATTTTGAAGATAGGTTTAGTTATGACGGGGGAACAAGTA
GCTGACTGTTTAACAAAAGCTTTAAGTGTTGGGGAGTGTACTTCATCGTGTAACAAGATGGGCATGATAGATATCTATCG
CCCATCTTGAGGGGGAGTGTTGAGTTATGTATGTGTTGGCACATGAGGCCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis