Browse Element(s) Details


OsAffx.4083.1.S1_at

Description tigr:9632.m04241
TID=OsAffx.4083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxygen evolving enhancer protein 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4420011/11Oxygen-evolving enhancer protein 3, chloroplast precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44170NANA4+25929178..25929798hypothetical protein
LOC_Os04g44180OsAffx.4082.1.S1_at11/114+25934535..25938038hypothetical protein
LOC_Os04g44190Os.52615.1.S1_at11/114+25939763..25947697expressed protein
LOC_Os04g44190Os.51599.2.S1_at10/114+25939763..25947697expressed protein
LOC_Os04g44190Os.53813.1.S1_at1/114+25939763..25947697expressed protein
LOC_Os04g44200OsAffx.4083.1.S1_at11/114+25948810..25949456Oxygen-evolving enhancer protein 3, chloroplast precursor, putative
LOC_Os04g44210Os.49430.1.S1_s_at11/114+25949578..25954823expressed protein
LOC_Os04g44210Os.7655.1.S2_at1/114+25949578..25954823expressed protein
LOC_Os04g44220Os.49961.1.S1_at11/114+25958167..25960749expressed protein
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4083.1.S1_at--1025--3251Chr04:25948903..25948927 (25 bp)
CAACGGAGTCGGAGACCGCCAGCCA
LOC_Os04g44200
OsAffx.4083.1.S1_at--1079--6691Chr04:25949010..25949034 (25 bp)
GTTCGAGTTCGACCTGAGGATCACT
LOC_Os04g44200
OsAffx.4083.1.S1_at--418--8891Chr04:25949024..25949048 (25 bp)
TGAGGATCACTGTGCCGGAGCAGTC
LOC_Os04g44200
OsAffx.4083.1.S1_at--142--6231Chr04:25949062..25949086 (25 bp)
GAGGCCGTCGTGAAGCTCCACGCGA
LOC_Os04g44200
OsAffx.4083.1.S1_at--892--9411Chr04:25949069..25949093 (25 bp)
TCGTGAAGCTCCACGCGAGGAACCT
LOC_Os04g44200
OsAffx.4083.1.S1_at--742--9711Chr04:25949171..25949195 (25 bp)
TCAAGCAGGACCTCTACGCCATCAT
LOC_Os04g44200
OsAffx.4083.1.S1_at--72--9571Chr04:25949249..25949362 (25 bp)
TCTTCAACAGCGTCACCAGCCTAGA
LOC_Os04g44200
OsAffx.4083.1.S1_at--905--7091Chr04:25949260..25949373 (25 bp)
GTCACCAGCCTAGATTATGCGGCCA
LOC_Os04g44200
OsAffx.4083.1.S1_at--669--151Chr04:25949362..25949386 (25 bp)
ATTATGCGGCCAGGGACAAGGATGA
LOC_Os04g44200
OsAffx.4083.1.S1_at--397--6311Chr04:25949382..25949406 (25 bp)
GATGAGCTCCGAGTTCAGGAATACT
LOC_Os04g44200
OsAffx.4083.1.S1_at--287--3491Chr04:25949397..25949421 (25 bp)
CAGGAATACTACAGCAACATGATCA
LOC_Os04g44200
Target Sequence 
CAACGGAGTCGGAGACCGCCAGCCACCGGCAGGCGGCGGCTGGCGGCGTCGCTCCTCGCGTCCCAGCTGCTGCTGCTGCC
CGCGGCGGCGACCAGCGTCGCCGGCGCGTTCGAGTTCGACCTGAGGATCACTGTGCCGGAGCAGTCCGGCGAGGAGGCCG
AGGCCGTCGTGAAGCTCCACGCGAGGAACCTGGTGCGCGTCAAGGGGCTCATCGACGCCAGGTCGTGGAGGGAGCTGCAG
GCGGCGCTCCGGTCCAGCGCCGCCAACCTCAAGCAGGACCTCTACGCCATCATCCAGGCGAGCCCGGCGAGCCGGCGGCC
GGAGCTCCGGCGGCTCTACTCCGACCTCTTCAACAGCGTCACCAGCCTAGATTATGCGGCCAGGGACAAGGATGAGCTCC
GAGTTCAGGAATACTACAGCAACATGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis