Browse Element(s) Details


Os.52615.1.S1_at

Description gb:AK068328.1
DB_XREF= gi:32978346
TID=Os.52615.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146P05, full insert sequence.
FL= gb:AK068328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g44160OsAffx.26452.1.S1_at11/114+25919936..25920142hypothetical protein
LOC_Os04g44170NANA4+25929178..25929798hypothetical protein
LOC_Os04g44180OsAffx.4082.1.S1_at11/114+25934535..25938038hypothetical protein
LOC_Os04g44190Os.52615.1.S1_at11/114+25939763..25947697expressed protein
LOC_Os04g44190Os.51599.2.S1_at10/114+25939763..25947697expressed protein
LOC_Os04g44190Os.53813.1.S1_at1/114+25939763..25947697expressed protein
LOC_Os04g44200OsAffx.4083.1.S1_at11/114+25948810..25949456Oxygen-evolving enhancer protein 3, chloroplast precursor, putative
LOC_Os04g44210Os.49430.1.S1_s_at11/114+25949578..25954823expressed protein
LOC_Os04g44210Os.7655.1.S2_at1/114+25949578..25954823expressed protein
LOC_Os04g44220Os.49961.1.S1_at11/114+25958167..25960749expressed protein
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019684biological_processphotosynthesis, light reaction
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52615.1.S1_at--666--2551Chr04:25946517..25946541 (25 bp)
AACTGCGCTGTTGAACTCTTCTCAA
LOC_Os04g44190
Os.52615.1.S1_at--401--8871Chr04:25946564..25946588 (25 bp)
TGATGAGGACTCGTGGGACCTTCTT
LOC_Os04g44190
Os.52615.1.S1_at--940--5831Chr04:25946580..25946604 (25 bp)
GACCTTCTTGCGAGGGATCTTCGGT
LOC_Os04g44190
Os.52615.1.S1_at--319--9571Chr04:25946597..25946621 (25 bp)
TCTTCGGTTGAAGGCTACATTCTTG
LOC_Os04g44190
Os.52615.1.S1_at--587--1291Chr04:25946674..25946698 (25 bp)
AGATGCTCACCGGTTTAGCGAACAA
LOC_Os04g44190
Os.52615.1.S1_at--290--4191Chr04:25947340..25947364 (25 bp)
CCCTCATGCAGGTGTGCTACAGTGA
LOC_Os04g44190
Os.52615.1.S1_at--126--4851Chr04:25947355..25947379 (25 bp)
GCTACAGTGATACGACTCTTCTTCT
LOC_Os04g44190
Os.52615.1.S1_at--834--9011Chr04:25947447..25947471 (25 bp)
TGCAAGGCTAGTATTCGCTCTGCTT
LOC_Os04g44190
Os.52615.1.S1_at--796--9071Chr04:25947467..25947491 (25 bp)
TGCTTCTGCAGCATCGCAATGTATG
LOC_Os04g44190
Os.52615.1.S1_at--26--6411Chr04:25947508..25947532 (25 bp)
GATCTGAGAGCCTCACATTTTCTTG
LOC_Os04g44190
Os.52615.1.S1_at--266--5251Chr04:25947591..25947615 (25 bp)
GAATCACCCTCACCTATGTACATAT
LOC_Os04g44190
Target Sequence 
AACTGCGCTGTTGAACTCTTCTCAATGGAGGAGGACTTGGTGATTGATGATGAGGACTCGTGGGACCTTCTTGCGAGGGA
TCTTCGGTTGAAGGCTACATTCTTGTNCATTGACCTCGGCCGTGTGATTNGCTCCTGTGAGATTGATGAACACAAGAAGA
TGCTCACCGGTTTAGCGAACAAGTTTTTCTACTTCATGGATGAGTTGACGAATGCAGTGAGCAGCAGAAGCATCCCCCTC
ATGCAGGTGTGCTACAGTGATACGACTCTTCTTCTCCGCGAGGTGCTCTCCGCCCTTGTGCCCTCCCAGTAATTTGGGCC
TAATTCAAGATTAGATGCCCCCTGCAAGGCTAGTATTCGCTCTGCTTCTGCAGCATCGCAATGTATGGAGCAGGCGAGGG
TAAGATCTGAGAGCCTCACATTTTCTTGGAAGCAAGAAACACCCAGAAGAGGATGGATAAGGAAAATGTGAGAAGAATGA
GGTGCAGAATCACCCTCACCTATGTACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis