Browse Element(s) Details


Os.49430.1.S1_s_at

Description gb:AK119597.1
DB_XREF= gi:37989220
TID=Os.49430.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D12, full insert sequence.
FL= gb:AK119597.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4421011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44170NANA4+25929178..25929798hypothetical protein
LOC_Os04g44180OsAffx.4082.1.S1_at11/114+25934535..25938038hypothetical protein
LOC_Os04g44190Os.52615.1.S1_at11/114+25939763..25947697expressed protein
LOC_Os04g44190Os.51599.2.S1_at10/114+25939763..25947697expressed protein
LOC_Os04g44190Os.53813.1.S1_at1/114+25939763..25947697expressed protein
LOC_Os04g44200OsAffx.4083.1.S1_at11/114+25948810..25949456Oxygen-evolving enhancer protein 3, chloroplast precursor, putative
LOC_Os04g44210Os.49430.1.S1_s_at11/114+25949578..25954823expressed protein
LOC_Os04g44210Os.7655.1.S2_at1/114+25949578..25954823expressed protein
LOC_Os04g44220Os.49961.1.S1_at11/114+25958167..25960749expressed protein
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49430.1.S1_s_at--183--2991Chr04:25950224..25950248 (25 bp)
AATGAGTAAGATGCCTCCGTTGCCC
LOC_Os04g44210
Os.49430.1.S1_s_at--1065--2251Chr04:25950185..25950209 (25 bp)
AAATCTTGCTAGCTTCGTACTTCCT
LOC_Os04g44210
Os.49430.1.S1_s_at--1158--10651Chr04:25950080..25950189 (25 bp)
TTCCTGGTCTTACAGTGCCACAATT
LOC_Os04g44210
Os.49430.1.S1_s_at--3--3311Chr04:25950062..25950086 (25 bp)
CACAATTTCTCGGAGGCAGCCAATT
LOC_Os04g44210
Os.49430.1.S1_s_at--191--7071Chr04:25950016..25950040 (25 bp)
GTAAGTCACTGCCAACAGGTTGCAC
LOC_Os04g44210
Os.49430.1.S1_s_at--980--7971Chr04:25949898..25949922 (25 bp)
GGATCCTGCTTTCTCTATCAGAAGG
LOC_Os04g44210
Os.49430.1.S1_s_at--644--7051Chr04:25949863..25949887 (25 bp)
GTAACTGTAACCAATCTGCTGCTCG
LOC_Os04g44210
Os.49430.1.S1_s_at--565--9451Chr04:25949841..25949865 (25 bp)
TCGGCCTCCACTGACATGGGTTGAA
LOC_Os04g44210
Os.49430.1.S1_s_at--200--4711Chr04:25949805..25949829 (25 bp)
GCTGGCCAGCGACAAGCCTGTAAAA
LOC_Os04g44210
Os.49430.1.S1_s_at--16--5551Chr04:25949754..25949778 (25 bp)
GAAACTTCAGTTTTGCTCGTCTTGG
LOC_Os04g44210
Os.49430.1.S1_s_at--1145--10571Chr04:25949692..25949716 (25 bp)
TTCTCATCCTGTCAGTTTCTCAGTA
LOC_Os04g44210
Target Sequence 
AATGAGTAAGATGCCTCCGTTGCCCGTCTCGGTGAATGAAAATCTTGCTAGCTTCGTACTTCCTGGTCTTACAGTGCCAC
AATTTCTCGGAGGCAGCCAATTGAAGGAGGAACCAAGAGGATGGTAAGTCACTGCCAACAGGTTGCACATGAAGCAAACG
TTTAAACTCCATCACAAACTTAGTGAAATATTTGGGAATTACTGCTGTCAGATGGTGATGACTGATGAGTAGAACTACCA
GGGATCCTGCTTTCTCTATCAGAAGGCGAAGGGGAGGTAACTGTAACCAATCTGCTGCTCGGCCTCCACTGACATGGGTT
GAACGTACGCCCCAGCTGGCCAGCGACAAGCCTGTAAAACTGGTGGCTGAACAGTAATATTTCAGGAAACTTCAGTTTTG
CTCGTCTTGGTGCACCTGCACATATTGAATTTTTTTTTCTTTTCGATTTCTCATCCTGTCAGTTTCTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49430.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis