Browse Element(s) Details


Os.49961.1.S1_at

Description gb:AK119440.1
DB_XREF= gi:37989063
TID=Os.49961.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-C02, full insert sequence.
FL= gb:AK119440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4422011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44180OsAffx.4082.1.S1_at11/114+25934535..25938038hypothetical protein
LOC_Os04g44190Os.52615.1.S1_at11/114+25939763..25947697expressed protein
LOC_Os04g44190Os.51599.2.S1_at10/114+25939763..25947697expressed protein
LOC_Os04g44190Os.53813.1.S1_at1/114+25939763..25947697expressed protein
LOC_Os04g44200OsAffx.4083.1.S1_at11/114+25948810..25949456Oxygen-evolving enhancer protein 3, chloroplast precursor, putative
LOC_Os04g44210Os.49430.1.S1_s_at11/114+25949578..25954823expressed protein
LOC_Os04g44210Os.7655.1.S2_at1/114+25949578..25954823expressed protein
LOC_Os04g44220Os.49961.1.S1_at11/114+25958167..25960749expressed protein
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein
LOC_Os04g44230OsAffx.26455.1.S1_at11/114+25980070..25984574Cytokinin dehydrogenase 5 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49961.1.S1_at--814--3011Chr04:25958743..25958767 (25 bp)
AATGCATGCTTAGTGTGCCCGTGTT
LOC_Os04g44220
Os.49961.1.S1_at--1123--7031Chr04:25958695..25958719 (25 bp)
GTAAGCTATCGCCTTTAGCCGGAGA
LOC_Os04g44220
Os.49961.1.S1_at--50--10471Chr04:25958681..25958705 (25 bp)
TTAGCCGGAGACGTGACTCGTATCT
LOC_Os04g44220
Os.49961.1.S1_at--1045--2771Chr04:25958650..25958674 (25 bp)
AAGAGATCGTTCACTTGCTCACTTG
LOC_Os04g44220
Os.49961.1.S1_at--60--1551Chr04:25958620..25958644 (25 bp)
AGCATATGACAGCAATTCCTCCACT
LOC_Os04g44220
Os.49961.1.S1_at--184--7051Chr04:25958580..25958604 (25 bp)
GTAAATCCTTATGTGCTCTGCCGTA
LOC_Os04g44220
Os.49961.1.S1_at--135--4231Chr04:25958521..25958545 (25 bp)
CCGAACTATGTTCTCTGGGCGAAAT
LOC_Os04g44220
Os.49961.1.S1_at--330--1791Chr04:25958347..25958371 (25 bp)
ACCGTCGAGTGTTGTGCATCTTAGT
LOC_Os04g44220
Os.49961.1.S1_at--337--10451Chr04:25958327..25958351 (25 bp)
TTAGTGACCACCAGCGCTGAATTGC
LOC_Os04g44220
Os.49961.1.S1_at--219--7711Chr04:25958288..25958312 (25 bp)
GGGTCCCACCGCAAATTCTATATGT
LOC_Os04g44220
Os.49961.1.S1_at--857--771Chr04:25958267..25958291 (25 bp)
ATGTGCGCTGTACACTTCAGAGTTC
LOC_Os04g44220
Target Sequence 
AATGCATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTTAGCCGGAGACGTGACT
CGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCAGCATATGACAGCAATTCCTCCACTACGTACGTGGAC
GCGGTAAATCCTTATGTGCTCTGCCGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGG
GCGAAATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAATTTGGAGAAAAAAGGA
TTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGACCACCCAAAACAATTCCCCTACTGCACCTCTCACCG
TCGAGTGTTGTGCATCTTAGTGACCACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGT
GCGCTGTACACTTCAGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis