Browse Element(s) Details


Os.35754.1.S1_at

Description gb:AK065958.1
DB_XREF= gi:32975976
TID=Os.35754.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045D17, full insert sequence.
FL= gb:AK065958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1985011/11CRS1/YhbY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19800NANA9+11852027..11856936Puromycin-sensitive aminopeptidase, putative
LOC_Os09g19810Os.53813.1.S1_at1/119+11857270..11859996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19820Os.51599.1.S1_at11/119+11861273..11865370aminopeptidase, putative, expressed
LOC_Os09g19830Os.52449.1.S1_at11/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19830Os.35502.1.A1_at10/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19840OsAffx.29929.1.S1_at11/119+11878033..11878467hypothetical protein
LOC_Os09g19850Os.35754.1.S1_at11/119+11879514..11884068CRS1/YhbY domain containing protein, expressed
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35754.1.S1_at--862--6011Chr09:11883531..11883555 (25 bp)
GAGAGGAGGCCTACCTGCAAACTTA
LOC_Os09g19850
Os.35754.1.S1_at--157--3111Chr09:11883597..11883621 (25 bp)
AATATCTCTGAATCTTAACTGGCGA
LOC_Os09g19850
Os.35754.1.S1_at--253--2531Chr09:11883613..11883637 (25 bp)
AACTGGCGAAACTTCGGTGAGTCCG
LOC_Os09g19850
Os.35754.1.S1_at--631--191Chr09:11883681..11883705 (25 bp)
ATTTCTGCAGTGTTACTCAAGAGGC
LOC_Os09g19850
Os.35754.1.S1_at--523--2791Chr09:11883699..11883723 (25 bp)
AAGAGGCAGGCAGTTTTAAGATTCA
LOC_Os09g19850
Os.35754.1.S1_at--834--5831Chr09:11883750..11883774 (25 bp)
GACCTGCAACAGCATTAGTGGCCTT
LOC_Os09g19850
Os.35754.1.S1_at--809--8451Chr09:11883768..11883792 (25 bp)
TGGCCTTTGTCCATTGCGAGATCAA
LOC_Os09g19850
Os.35754.1.S1_at--854--7771Chr09:11883828..11883852 (25 bp)
GGTGCATGGTCTGCAGTTGCTGCCA
LOC_Os09g19850
Os.35754.1.S1_at--1121--10831Chr09:11883877..11883901 (25 bp)
TTGGCTACTTCCATAGCTCCATCCA
LOC_Os09g19850
Os.35754.1.S1_at--242--2311Chr09:11883943..11883967 (25 bp)
AAAGGTTTCTGTCAACACACGATCA
LOC_Os09g19850
Os.35754.1.S1_at--302--4811Chr09:11884015..11884039 (25 bp)
GCTCGTGTGAGTTCGTTTCATTTTG
LOC_Os09g19850
Target Sequence 
GAGAGGAGGCCTACCTGCAAACTTACATCAGTGAGGATGAAGAGGAACCTGAGGATGATCAGAATGAATATCTCTGAATC
TTAACTGGCGAAACTTCGGTGAGTCCGGGAGAAAAGTCAGTAGTAAAGCATTGCATGTTCATATTGTGAAATTTCTGCAG
TGTTACTCAAGAGGCAGGCAGTTTTAAGATTCATCTATGGATTATTGCCAACACAAATTGACCTGCAACAGCATTAGTGG
CCTTTGTCCATTGCGAGATCAACGACAAAGGATGTAGCTTGAGTGTGTGTGGATTGTGGTGCATGGTCTGCAGTTGCTGC
CATTCCTTTTTTTTTTTTTTTTTNNACCTTGGCTACTTCCATAGCTCCATCCATGCCTGATGCCCTGATGGCCTTNTACA
TCCTGCAGATTTGAAAAGGTTTCTGTCAACACACGATCAAGTTGTNTGCTGTGCAGAAGTTTGCAAAGTGGCAGTGTATA
AATCANGCTCGTGTGAGTTCGTTTCATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis