Browse Element(s) Details


Os.7809.1.S1_at

Description gb:AK065312.1
DB_XREF= gi:32975330
TID=Os.7809.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.7809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002O19, full insert sequence.
FL= gb:AK065312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1989011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19840OsAffx.29929.1.S1_at11/119+11878033..11878467hypothetical protein
LOC_Os09g19850Os.35754.1.S1_at11/119+11879514..11884068CRS1/YhbY domain containing protein, expressed
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed
LOC_Os09g19910Os.7560.1.S1_at11/119+11912657..11915279expressed protein
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7809.1.S1_at--112--931Chr09:11906564..11906588 (25 bp)
AGGCATCGTTGGTGCTGGACTGCTT
LOC_Os09g19890
Os.7809.1.S1_at--512--9571Chr09:11906611..11906635 (25 bp)
TCTTGCCCAGGTTGTAAGTTCCATT
LOC_Os09g19890
Os.7809.1.S1_at--977--2811Chr09:11906626..11906650 (25 bp)
AAGTTCCATTATCATCTACCACCAT
LOC_Os09g19890
Os.7809.1.S1_at--656--9991Chr09:11906666..11906690 (25 bp)
TAGCGCGCACTTCGATCGAATAGGT
LOC_Os09g19890
Os.7809.1.S1_at--954--1551Chr09:11906700..11906724 (25 bp)
AGCTTCAGGTATGTGCTTCATGATG
LOC_Os09g19890
Os.7809.1.S1_at--1131--8071Chr09:11906750..11906774 (25 bp)
GGAGCTCATTCATATCTGTTCTGTT
LOC_Os09g19890
Os.7809.1.S1_at--263--10791Chr09:11906773..11906797 (25 bp)
TTGTTGGTTTGGAAGCCTTGCTGAT
LOC_Os09g19890
Os.7809.1.S1_at--296--5551Chr09:11906852..11906876 (25 bp)
GAAACTGGGTGCTTCTGTATGTTGC
LOC_Os09g19890
Os.7809.1.S1_at--86--8771Chr09:11906867..11906891 (25 bp)
TGTATGTTGCATGCGTTTGCCCGAA
LOC_Os09g19890
Os.7809.1.S1_at--58--4651Chr09:11906879..11906903 (25 bp)
GCGTTTGCCCGAATGTTGTACATAT
LOC_Os09g19890
Os.7809.1.S1_at--310--1191Chr09:11906991..11907015 (25 bp)
AGTAGCCAGCTCTTGTTTGTATAAT
LOC_Os09g19890
Target Sequence 
AGGCATCGTTGGTGCTGGACTGCTTCTCGGCTGGACTCTCGGGTGGCTCTTGCCCAGGTTGTAAGTTCCATTATCATCTA
CCACCATGGCTAGATTAACGCCTAGCGCGCACTTCGATCGAATAGGTGATAGATAAAGCTTCAGGTATGTGCTTCATGAT
GTTAGAAGAATGAAGATCATATTCTTGGAGCTCATTCATATCTGTTCTGTTGTTGGTTTGGAAGCCTTGCTGATGATATT
TTCATATCTTCATGTACATATAGGATGAATTTGCTGTATATATTTTCAGAAACTGGGTGCTTCTGTATGTTGCATGCGTT
TGCCCGAATGTTGTACATATATGGGGTCAGTGGTGGTGGAACTAGGGAAAAAAATCCGTCGACATCAACAATGTATTAAG
TATAAAACTTGTATTTTCAGTTGCTGGAGTAGCCAGCTCTTGTTTGTATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis