Browse Element(s) Details


Os.9782.1.S1_at

Description gb:AK072899.1
DB_XREF= gi:32982922
TID=Os.9782.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148B06, full insert sequence.
FL= gb:AK072899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1993011/11HOTHEAD protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein
LOC_Os09g19900Os.18123.1.S1_at11/119+11908066..11911723transducin family protein, putative, expressed
LOC_Os09g19910Os.7560.1.S1_at11/119+11912657..11915279expressed protein
LOC_Os09g19920OsAffx.29931.1.S1_at11/119+11915673..11919094expressed protein
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9782.1.S1_at--205--9691Chr09:11920538..11920562 (25 bp)
TCACTCGTTGCGTCTATGGTATCAA
LOC_Os09g19930
Os.9782.1.S1_at--66--2131Chr09:11920491..11920515 (25 bp)
ACAAACCGTTTCTCTGAACTGTCTG
LOC_Os09g19930
Os.9782.1.S1_at--69--8991Chr09:11920477..11920501 (25 bp)
TGAACTGTCTGCCAACACTGATGGA
LOC_Os09g19930
Os.9782.1.S1_at--357--5631Chr09:11920383..11920407 (25 bp)
GACACAGAATCCCTAGAGCAATTTT
LOC_Os09g19930
Os.9782.1.S1_at--671--2471Chr09:11920289..11920313 (25 bp)
AACACCGTGTGCTTGGAGTTTCAGG
LOC_Os09g19930
Os.9782.1.S1_at--323--1211Chr09:11920273..11920297 (25 bp)
AGTTTCAGGCGTCCGTGTAGTCGAT
LOC_Os09g19930
Os.9782.1.S1_at--1037--6931Chr09:11920257..11920281 (25 bp)
GTAGTCGATGGCTCAACATTTTCTA
LOC_Os09g19930
Os.9782.1.S1_at--137--2091Chr09:11920242..11920266 (25 bp)
ACATTTTCTAGATCACCAGGGACGA
LOC_Os09g19930
Os.9782.1.S1_at--783--5431Chr09:11920219..11920243 (25 bp)
GAACCCTCAAGCCACGGTCATGATG
LOC_Os09g19930
Os.9782.1.S1_at--1095--1711Chr09:11920014..11920038 (25 bp)
ACCAGCCTTTTGTTATGTGTGACCT
LOC_Os09g19930
Os.9782.1.S1_at--1007--4851Chr09:11919930..11919954 (25 bp)
GCTAGGAGTTTCATCTGTACCCAGT
LOC_Os09g19930
Target Sequence 
TCACTCGTTGCGTCTATGGTATCAAGACCATTGAACGAATACTGAAGACAAACCGTTTCTCTGAACTGTCTGCCAACACT
GATGGACATTCAATGGAAAGAGTGCTCAATATGAGTGTGCAGGCTAATGTGAACTTGATACCCAAGCATACAAATGACAC
AGAATCCCTAGAGCAATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATGCCATGTAGGGAAGGTGG
TTGATCAGCAACACCGTGTGCTTGGAGTTTCAGGCGTCCGTGTAGTCGATGGCTCAACATTTTCTAGATCACCAGGGACG
AACCCTCAAGCCACGGTCATGATGATGGGCAGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGNTCGAGCAGCTGG
AGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTGCTGGGATCTA
GTGTGATTCACCGAAGAAAGACNAAGCTAGGAGTTTCATCTGTACCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis