Browse Element(s) Details


Os.23618.1.S1_at

Description gb:CA760119
DB_XREF= gi:25804158
DB_XREF=BR060011A10H07.ab1
CLONE=BR060011A10H07.ab1
TID=Os.23618.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0417G05.19 (P0417G05.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1246011/11expressed protein
LOC_Os09g199301/11HOTHEAD protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12440Os.31908.1.S1_at11/111+6810536..6812336AP2 domain containing protein, expressed
LOC_Os01g12460Os.23618.1.S1_at11/111+6826906..6829572expressed protein
LOC_Os01g12470Os.51983.1.A1_x_at11/111+6833922..6838052Mitochondrial carrier protein, expressed
LOC_Os01g12480Os.12759.1.S1_at10/111+6838328..6840340expressed protein
LOC_Os01g12490Os.22585.1.S1_at11/111+6854024..6857754expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23618.1.S1_at--21--5411Chr01:6827472..6827496 (25 bp)
GAAGCTTTGGATTTCGTGCGCAATG
LOC_Os01g12460
Os.23618.1.S1_at--695--7291Chr01:6827457..6827481 (25 bp)
GTGCGCAATGTCTGCCACGGTGTAT
LOC_Os01g12460
Os.23618.1.S1_at--781--7431Chr01:6827438..6827462 (25 bp)
GTGTATGGCCTTCTCTGTCAATAAA
LOC_Os01g12460
Os.23618.1.S1_at--73--11Chr01:6827302..6827326 (25 bp)
AACCCTTGGTGGATTATTGGGCCAT
LOC_Os01g12460
Os.23618.1.S1_at--777--7551Chr01:6827284..6827308 (25 bp)
GGGCCATACTGGAGTGTTAGCTATT
LOC_Os01g12460
Os.23618.1.S1_at--426--6751Chr01:6827239..6827263 (25 bp)
GTTACATTGGTTATCCTCCGGACAA
LOC_Os01g12460
Os.23618.1.S1_at--70--9672Chr09:11923573..11923687 (24 bp)
TCAGCCAAGAGAGTTCATCACAGTT
LOC_Os09g19930
Os.23618.1.S1_at--233--7411Chr01:6827126..6827150 (25 bp)
GTGATCTCGATGTGTTCTTAGCAAG
LOC_Os01g12460
Os.23618.1.S1_at--422--7011Chr01:6827059..6827083 (25 bp)
GTACTCGTAGGATATCATGGCATTT
LOC_Os01g12460
Os.23618.1.S1_at--211--10451Chr01:6827006..6827030 (25 bp)
TTAGGTACCTATCGCATTCGCTTAG
LOC_Os01g12460
Os.23618.1.S1_at--953--4271Chr01:6826967..6826991 (25 bp)
CCTGTTATCATCTCTTGTCGTTGTA
LOC_Os01g12460
Target Sequence 
GAAGCTTTGGATTTCGTGCGCAATGTCTGCCACGGTGTATGGCCTTCTCTGTCAATAAACAAGCCTGNNGAAACTAGGAA
GCCATTNCTGGTGCTGACAGCAAAAATGCCAATTTCCTGGGGCAGATNGTAGCTTCTAGCGTTGCTTTGGCTAGGAACAG
TTTCAGTATCAAAACCCTTGGTGGATTATTGGGCCATACTGGAGTGTTAGCTATTGGCATGATAACACTGCTGCAGTTAC
ATTGGTTATCCTCCGGACAACAGAGCCCATCAACTTGTAGATACAGCTACAAGATGATCAGCCAAGAGAGTTCATCACAG
TTTGAAACAGCTATGGATACCAGAATANGTGATCTCGATGTGTTCTTAGCAAGAGGTTGAGGGGTCATGTTGTTTGTACA
TGTTTCCTGTAGTATGTACTCGTAGGATATCATGGCATTTGTGNTCTTCTGNTCATAGAATTGTCAGTTTAGGTACCTAT
CGCATTCGCTTAGGAGTAGATTTGTAGCCTGTTATCATCTCTTGTCGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis