Browse Element(s) Details


Os.12759.1.S1_at

Description gb:AK109225.1
DB_XREF= gi:32994434
TID=Os.12759.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0417G05.21 (P0417G05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E09, full insert sequence.
FL= gb:AK109225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1248010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12460Os.23618.1.S1_at11/111+6826906..6829572expressed protein
LOC_Os01g12470Os.51983.1.A1_x_at11/111+6833922..6838052Mitochondrial carrier protein, expressed
LOC_Os01g12480Os.12759.1.S1_at10/111+6838328..6840340expressed protein
LOC_Os01g12490Os.22585.1.S1_at11/111+6854024..6857754expressed protein
LOC_Os01g12500NANA1+6860123..6860549hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12759.1.S1_at--1052--5911NONE
GAGCTTTTCGGTGCATCTACATGGA
NONE
Os.12759.1.S1_at--356--3571Chr01:6838925..6838949 (25 bp)
CATTAAGAAGCACCGAACGCCGTTA
LOC_Os01g12480
Os.12759.1.S1_at--826--2591Chr01:6838910..6838934 (25 bp)
AACGCCGTTAAGTGTATCAAAGCCA
LOC_Os01g12480
Os.12759.1.S1_at--1142--5691Chr01:6838669..6838693 (25 bp)
GACTAGACCTGAGGACCGAGTACTT
LOC_Os01g12480
Os.12759.1.S1_at--818--5811Chr01:6838656..6838680 (25 bp)
GACCGAGTACTTAGGGCTACCCAAG
LOC_Os01g12480
Os.12759.1.S1_at--764--1071Chr01:6838644..6838668 (25 bp)
AGGGCTACCCAAGGGCACTTCAAGA
LOC_Os01g12480
Os.12759.1.S1_at--671--6271Chr01:6838608..6838632 (25 bp)
GATGTCAAGCATCTTTTGGCACCAC
LOC_Os01g12480
Os.12759.1.S1_at--725--3431Chr01:6838403..6838427 (25 bp)
CAGAGGCATGTTTTGTTTCAGTGTC
LOC_Os01g12480
Os.12759.1.S1_at--1039--10531Chr01:6838387..6838411 (25 bp)
TTCAGTGTCTTATGAGGCTCAGCCT
LOC_Os01g12480
Os.12759.1.S1_at--981--1671Chr01:6838367..6838391 (25 bp)
AGCCTCCGGTTCGATTTGCATGTAG
LOC_Os01g12480
Os.12759.1.S1_at--141--751Chr01:6838348..6838372 (25 bp)
ATGTAGTCTGGCCTCTGCAAAGAAA
LOC_Os01g12480
Target Sequence 
GAGCTTTTCGGTGCATCTACATGGAAGGAACGGAAGCAATTAGAGAACCGTAAAGTAGTTCAGTTGGGTGGAAAGGCCAT
TAAGAAGCACCGAACGCCGTTAAGTGTATCAAAGCCAGCTATGAAGAACCAAAAGAAAAGAGAAGAGAAGAAAGCGGAAG
AGGAAAGACTACTTGGAATATTTAGGAAACGGGATTCCAAGAACAGCAAAGCTCAAAAGACTAGACCTGAGGACCGAGTA
CTTAGGGCTACCCAAGGGCACTTCAAGAATGGTATACTTGATGTCAAGCATCTTTTGGCACCACCCAAACNATCGGGTCG
GGATGCGCCTGAGCAGAAAATGAGAATGGGCAAGAAAAATGGCAAGGGAAAGCAGAAGGGAGGCAGAAGGAAGAGACGTT
AGATAAAACACCCTATTAGCTTTTGTATTAAGATGGACTCATCNTCTACTTGTATCTTTCAGTGTAAAGATCGAAAACAT
TTTGCAGAGGCATGTTTTGTTTCAGTGTCTTATGAGGCTCAGCCTCCGGTTCGATTTGCATGTAGTCTGGCCTCTGCAAA
GAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis