Browse Element(s) Details


Os.22585.1.S1_at

Description gb:AK070386.1
DB_XREF= gi:32980410
TID=Os.22585.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) dimethylaniline monooxygenase-like protein (P0417G05.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054L24, full insert sequence.
FL= gb:AK070386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1249011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12460Os.23618.1.S1_at11/111+6826906..6829572expressed protein
LOC_Os01g12470Os.51983.1.A1_x_at11/111+6833922..6838052Mitochondrial carrier protein, expressed
LOC_Os01g12480Os.12759.1.S1_at10/111+6838328..6840340expressed protein
LOC_Os01g12490Os.22585.1.S1_at11/111+6854024..6857754expressed protein
LOC_Os01g12500NANA1+6860123..6860549hypothetical protein
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22585.1.S1_at--1128--8411Chr01:6857156..6857180 (25 bp)
GGCCTGTACGCTGTTGGTTTCTCAA
LOC_Os01g12490
Os.22585.1.S1_at--1074--891Chr01:6857180..6857204 (25 bp)
AGGCGTGGTCTCTCTGGAGTGTCCA
LOC_Os01g12490
Os.22585.1.S1_at--212--1111Chr01:6857197..6857221 (25 bp)
AGTGTCCATGGACGCCAACAACATT
LOC_Os01g12490
Os.22585.1.S1_at--567--5051Chr01:6857236..6857260 (25 bp)
GCAGCGTTTGCACGATATGGGCTAT
LOC_Os01g12490
Os.22585.1.S1_at--823--8171Chr01:6857290..6857314 (25 bp)
GGAACCCACTTGTTTTGATCAGAGC
LOC_Os01g12490
Os.22585.1.S1_at--959--3311Chr01:6857329..6857353 (25 bp)
CACGTCATGTGCTGGTCTGGTTTAC
LOC_Os01g12490
Os.22585.1.S1_at--434--8151Chr01:6857401..6857425 (25 bp)
GGACAATCTACCAGTGCATATGCAT
LOC_Os01g12490
Os.22585.1.S1_at--257--6431Chr01:6857437..6857461 (25 bp)
GATCAGGCTAGTGCATCTCATTTTT
LOC_Os01g12490
Os.22585.1.S1_at--761--1111Chr01:6857523..6857547 (25 bp)
AGTGATATGATTTGGCCGGCCTAAT
LOC_Os01g12490
Os.22585.1.S1_at--188--211Chr01:6857601..6857625 (25 bp)
ATCAGTTTAGTTTTGGTCGCGCGTC
LOC_Os01g12490
Os.22585.1.S1_at--795--10771Chr01:6857613..6857637 (25 bp)
TTGGTCGCGCGTCTTTTTTGAGAAA
LOC_Os01g12490
Target Sequence 
GGCCTGTACGCTGTTGGTTTCTCAAGGCGTGGTCTCTCTGGAGTGTCCATGGACGCCAACAACATTGTGCAGGATATTGT
GCAGCGTTTGCACGATATGGGCTATGAAAGAAGTGAGAACAACTGACATGGAATGGAACCCACTTGTTTTGATCAGAGCA
TTTTTCTTGTAGNCACGTCATGTGCTGGTCTGGTTTACATTTCNCCCTAATTAACAGGTAGATACAAGCCTGAAAAAAGC
CATCAGGACAATCTACCAGTGCATATGCATGCATATACTTTGATCAGGCTAGTGCATCTCATTTTTTTCCCCAAACTCAT
AATGTATATAAGTCATGGTATAGGCAGTAATCATTTGTTGCATTTTTAGTGATATGATTTGGCCGGCCTAATTTTAACTG
GAGGGAGTGAAAACTAGAGTATTGAGTTTGAGGGAGAATAGCATAATCAGTTTAGTTTTGGTCGCGCGTCTTTTTTGAGA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis